Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.97■■□□□ 1.11
HLA-DOAP06340 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.96■■□□□ 1.11
HLA-DOAP06340 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC21.96■■□□□ 1.11
HLA-DOAP06340 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
HLA-DOAP06340 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DOAP06340 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DOAP06340 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DOAP06340 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DOAP06340 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DOAP06340 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DOAP06340 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DOAP06340 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DOAP06340 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
HLA-DOAP06340 CHCHD2P8-201ENST00000429873 447 ntBASIC21.96■■□□□ 1.11
HLA-DOAP06340 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
HLA-DOAP06340 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DOAP06340 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DOAP06340 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.96■■□□□ 1.11
HLA-DOAP06340 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.96■■□□□ 1.11
HLA-DOAP06340 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DOAP06340 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
HLA-DOAP06340 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.96■■□□□ 1.11
HLA-DOAP06340 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HLA-DOAP06340 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.95■■□□□ 1.1
HLA-DOAP06340 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.95■■□□□ 1.1
HLA-DOAP06340 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.95■■□□□ 1.1
HLA-DOAP06340 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
HLA-DOAP06340 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.95■■□□□ 1.1
HLA-DOAP06340 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HLA-DOAP06340 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HLA-DOAP06340 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.95■■□□□ 1.1
HLA-DOAP06340 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.95■■□□□ 1.1
HLA-DOAP06340 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
HLA-DOAP06340 AP003733.1-201ENST00000491725 852 ntBASIC21.95■■□□□ 1.1
HLA-DOAP06340 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC21.95■■□□□ 1.1
HLA-DOAP06340 RNF126P1-202ENST00000569893 925 ntBASIC21.95■■□□□ 1.1
HLA-DOAP06340 MIR3652-201ENST00000579335 131 ntBASIC21.95■■□□□ 1.1
HLA-DOAP06340 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HLA-DOAP06340 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HLA-DOAP06340 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC21.95■■□□□ 1.1
HLA-DOAP06340 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.95■■□□□ 1.1
HLA-DOAP06340 AL161938.1-201ENST00000569833 2180 ntBASIC21.95■■□□□ 1.1
HLA-DOAP06340 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HLA-DOAP06340 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HLA-DOAP06340 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HLA-DOAP06340 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.95■■□□□ 1.1
HLA-DOAP06340 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
HLA-DOAP06340 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
HLA-DOAP06340 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.94■■□□□ 1.1
HLA-DOAP06340 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC21.94■■□□□ 1.1
HLA-DOAP06340 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.94■■□□□ 1.1
HLA-DOAP06340 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC21.94■■□□□ 1.1
HLA-DOAP06340 AP002383.4-201ENST00000442518 975 ntBASIC21.94■■□□□ 1.1
HLA-DOAP06340 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.94■■□□□ 1.1
HLA-DOAP06340 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.94■■□□□ 1.1
HLA-DOAP06340 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC21.94■■□□□ 1.1
HLA-DOAP06340 AP002414.4-201ENST00000589764 1148 ntBASIC21.94■■□□□ 1.1
HLA-DOAP06340 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC21.94■■□□□ 1.1
HLA-DOAP06340 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
HLA-DOAP06340 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 MTMR9LP-203ENST00000426597 1545 ntBASIC21.94■■□□□ 1.1
HLA-DOAP06340 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.94■■□□□ 1.1
HLA-DOAP06340 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC21.94■■□□□ 1.1
HLA-DOAP06340 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.94■■□□□ 1.1
HLA-DOAP06340 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HLA-DOAP06340 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HLA-DOAP06340 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HLA-DOAP06340 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.93■■□□□ 1.1
HLA-DOAP06340 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HLA-DOAP06340 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HLA-DOAP06340 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
HLA-DOAP06340 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HLA-DOAP06340 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HLA-DOAP06340 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
HLA-DOAP06340 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
HLA-DOAP06340 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
HLA-DOAP06340 MIR3180-1-201ENST00000580374 94 ntBASIC21.93■■□□□ 1.1
HLA-DOAP06340 MIR3180-3-201ENST00000584616 94 ntBASIC21.93■■□□□ 1.1
HLA-DOAP06340 AC012313.10-201ENST00000623509 926 ntBASIC21.93■■□□□ 1.1
HLA-DOAP06340 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
HLA-DOAP06340 Z83836.1-201ENST00000624605 1642 ntBASIC21.93■■□□□ 1.1
HLA-DOAP06340 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HLA-DOAP06340 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HLA-DOAP06340 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.93■■□□□ 1.1
HLA-DOAP06340 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HLA-DOAP06340 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
HLA-DOAP06340 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HLA-DOAP06340 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HLA-DOAP06340 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms