Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.5■□□□□ 0.23
SGCEO43556 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SGCEO43556 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.5■□□□□ 0.23
SGCEO43556 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.5■□□□□ 0.23
SGCEO43556 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.5■□□□□ 0.23
SGCEO43556 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SGCEO43556 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.5■□□□□ 0.23
SGCEO43556 REXO1L10P-201ENST00000615707 1290 ntBASIC16.5■□□□□ 0.23
SGCEO43556 REXO1L12P-201ENST00000622156 912 ntBASIC16.5■□□□□ 0.23
SGCEO43556 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SGCEO43556 AL031598.1-201ENST00000561511 1773 ntBASIC16.5■□□□□ 0.23
SGCEO43556 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
SGCEO43556 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SGCEO43556 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SGCEO43556 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SGCEO43556 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SGCEO43556 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
SGCEO43556 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SGCEO43556 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SGCEO43556 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SGCEO43556 AC096733.2-201ENST00000609937 1394 ntBASIC16.5■□□□□ 0.23
SGCEO43556 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.5■□□□□ 0.23
SGCEO43556 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SGCEO43556 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SGCEO43556 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SGCEO43556 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.5■□□□□ 0.23
SGCEO43556 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.49■□□□□ 0.23
SGCEO43556 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
SGCEO43556 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.49■□□□□ 0.23
SGCEO43556 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
SGCEO43556 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.49■□□□□ 0.23
SGCEO43556 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC16.49■□□□□ 0.23
SGCEO43556 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.49■□□□□ 0.23
SGCEO43556 AC097488.1-201ENST00000507834 756 ntBASIC16.49■□□□□ 0.23
SGCEO43556 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.49■□□□□ 0.23
SGCEO43556 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
SGCEO43556 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.49■□□□□ 0.23
SGCEO43556 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.49■□□□□ 0.23
SGCEO43556 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 AP003071.4-201ENST00000562276 1284 ntBASIC16.49■□□□□ 0.23
SGCEO43556 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
SGCEO43556 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.49■□□□□ 0.23
SGCEO43556 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.49■□□□□ 0.23
SGCEO43556 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.49■□□□□ 0.23
SGCEO43556 AL138781.2-201ENST00000617896 1843 ntBASIC16.49■□□□□ 0.23
SGCEO43556 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.49■□□□□ 0.23
SGCEO43556 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.49■□□□□ 0.23
SGCEO43556 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SGCEO43556 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
SGCEO43556 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
SGCEO43556 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.49■□□□□ 0.23
SGCEO43556 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SGCEO43556 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.48■□□□□ 0.23
SGCEO43556 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
SGCEO43556 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
SGCEO43556 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.48■□□□□ 0.23
SGCEO43556 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.48■□□□□ 0.23
SGCEO43556 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.48■□□□□ 0.23
SGCEO43556 MFAP1P1-201ENST00000442257 1255 ntBASIC16.48■□□□□ 0.23
SGCEO43556 MIR4785-201ENST00000585005 73 ntBASIC16.48■□□□□ 0.23
SGCEO43556 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.48■□□□□ 0.23
SGCEO43556 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.48■□□□□ 0.23
SGCEO43556 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.48■□□□□ 0.23
SGCEO43556 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
SGCEO43556 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
SGCEO43556 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
SGCEO43556 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.48■□□□□ 0.23
SGCEO43556 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.47■□□□□ 0.23
SGCEO43556 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms