Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX4O14627 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.94■□□□□ 0.46
CDX4O14627 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.94■□□□□ 0.46
CDX4O14627 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX4O14627 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CDX4O14627 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX4O14627 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.94■□□□□ 0.46
CDX4O14627 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX4O14627 RPSAP43-201ENST00000402237 625 ntBASIC17.94■□□□□ 0.46
CDX4O14627 RBM17P3-201ENST00000417687 1192 ntBASIC17.94■□□□□ 0.46
CDX4O14627 AC098831.1-202ENST00000438821 336 ntBASIC17.94■□□□□ 0.46
CDX4O14627 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CDX4O14627 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.94■□□□□ 0.46
CDX4O14627 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.94■□□□□ 0.46
CDX4O14627 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.94■□□□□ 0.46
CDX4O14627 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.94■□□□□ 0.46
CDX4O14627 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.94■□□□□ 0.46
CDX4O14627 AC027796.2-201ENST00000575326 344 ntBASIC17.94■□□□□ 0.46
CDX4O14627 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.94■□□□□ 0.46
CDX4O14627 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX4O14627 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX4O14627 AP001160.2-201ENST00000596071 487 ntBASIC17.94■□□□□ 0.46
CDX4O14627 FAM197Y3-203ENST00000618346 717 ntBASIC17.94■□□□□ 0.46
CDX4O14627 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.94■□□□□ 0.46
CDX4O14627 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDX4O14627 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CDX4O14627 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.94■□□□□ 0.46
CDX4O14627 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.94■□□□□ 0.46
CDX4O14627 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDX4O14627 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX4O14627 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.94■□□□□ 0.46
CDX4O14627 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX4O14627 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX4O14627 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX4O14627 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CDX4O14627 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.93■□□□□ 0.46
CDX4O14627 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CDX4O14627 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX4O14627 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX4O14627 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX4O14627 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.93■□□□□ 0.46
CDX4O14627 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX4O14627 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 AL356488.2-201ENST00000602755 427 ntBASIC17.93■□□□□ 0.46
CDX4O14627 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX4O14627 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX4O14627 GABARAPL3-202ENST00000624044 1851 ntBASIC17.92■□□□□ 0.46
CDX4O14627 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.92■□□□□ 0.46
CDX4O14627 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 TCF3P1-201ENST00000423021 1937 ntBASIC17.92■□□□□ 0.46
CDX4O14627 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CDX4O14627 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.92■□□□□ 0.46
CDX4O14627 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.92■□□□□ 0.46
CDX4O14627 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.92■□□□□ 0.46
CDX4O14627 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 AC010327.4-202ENST00000591484 748 ntBASIC17.92■□□□□ 0.46
CDX4O14627 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CDX4O14627 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.92■□□□□ 0.46
CDX4O14627 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.91■□□□□ 0.46
CDX4O14627 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDX4O14627 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX4O14627 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDX4O14627 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.91■□□□□ 0.46
CDX4O14627 TP73-AS1-210ENST00000637775 1455 ntBASIC17.91■□□□□ 0.46
CDX4O14627 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX4O14627 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX4O14627 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDX4O14627 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX4O14627 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX4O14627 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX4O14627 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.91■□□□□ 0.46
CDX4O14627 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX4O14627 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.91■□□□□ 0.46
CDX4O14627 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.91■□□□□ 0.46
CDX4O14627 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms