Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC35.44■■■■□ 3.26
SHROOM4Q9ULL8 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC35.44■■■■□ 3.26
SHROOM4Q9ULL8 ABR-217ENST00000572441 563 ntTSL 4 BASIC35.44■■■■□ 3.26
SHROOM4Q9ULL8 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC35.44■■■■□ 3.26
SHROOM4Q9ULL8 LITAF-220ENST00000620789 692 ntTSL 5 BASIC35.44■■■■□ 3.26
SHROOM4Q9ULL8 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
SHROOM4Q9ULL8 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
SHROOM4Q9ULL8 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
SHROOM4Q9ULL8 RCC2P3-201ENST00000418112 1537 ntBASIC35.43■■■■□ 3.26
SHROOM4Q9ULL8 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC35.43■■■■□ 3.26
SHROOM4Q9ULL8 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC35.43■■■■□ 3.26
SHROOM4Q9ULL8 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC35.43■■■■□ 3.26
SHROOM4Q9ULL8 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC35.43■■■■□ 3.26
SHROOM4Q9ULL8 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC35.43■■■■□ 3.26
SHROOM4Q9ULL8 HOTTIP_1.1-201ENST00000620415 57 ntBASIC35.43■■■■□ 3.26
SHROOM4Q9ULL8 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC35.43■■■■□ 3.26
SHROOM4Q9ULL8 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
SHROOM4Q9ULL8 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
SHROOM4Q9ULL8 AC008556.1-201ENST00000610908 2040 ntBASIC35.43■■■■□ 3.26
SHROOM4Q9ULL8 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 AC090616.6-201ENST00000582640 721 ntBASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 IGHV3OR16-7-201ENST00000604106 360 ntBASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 MIR7706-201ENST00000613747 67 ntBASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 AC007952.6-201ENST00000573168 2673 ntBASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 AC003957.1-201ENST00000625108 2673 ntBASIC35.42■■■■□ 3.26
SHROOM4Q9ULL8 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 IGHV3-47-201ENST00000425060 335 ntBASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 BET1L-206ENST00000486280 665 ntTSL 3 BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 RNPS1P1-201ENST00000507437 918 ntBASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 FICD-205ENST00000552758 603 ntTSL 2 BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 IRX1P1-201ENST00000438849 1838 ntBASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC35.41■■■■□ 3.26
SHROOM4Q9ULL8 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 KRT18P67-201ENST00000432816 1264 ntBASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 CDV3-207ENST00000508481 661 ntTSL 3 BASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 AC092865.5-201ENST00000545435 363 ntBASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
SHROOM4Q9ULL8 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 UBC-206ENST00000538617 1303 ntTSL 5 BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
SHROOM4Q9ULL8 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC35.38■■■■□ 3.26
SHROOM4Q9ULL8 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 AC106730.1-201ENST00000566722 1090 ntBASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 Z69720.1-201ENST00000601483 472 ntBASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC35.38■■■■□ 3.25
SHROOM4Q9ULL8 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC35.38■■■■□ 3.25
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms