Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TDP1Q9NUW8 Z83836.1-201ENST00000624605 1642 ntBASIC19.22■□□□□ 0.67
TDP1Q9NUW8 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 AP003733.1-201ENST00000491725 852 ntBASIC19.22■□□□□ 0.67
TDP1Q9NUW8 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TDP1Q9NUW8 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 AC007952.6-201ENST00000573168 2673 ntBASIC19.21■□□□□ 0.67
TDP1Q9NUW8 AC003957.1-201ENST00000625108 2673 ntBASIC19.21■□□□□ 0.67
TDP1Q9NUW8 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TDP1Q9NUW8 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 Z98044.1-201ENST00000632503 1764 ntBASIC19.2■□□□□ 0.66
TDP1Q9NUW8 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 AC005332.3-201ENST00000589904 676 ntBASIC19.2■□□□□ 0.66
TDP1Q9NUW8 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 HEIH-201ENST00000623091 1652 ntBASIC19.2■□□□□ 0.66
TDP1Q9NUW8 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.2■□□□□ 0.66
TDP1Q9NUW8 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 AL357033.4-201ENST00000617703 1807 ntBASIC19.19■□□□□ 0.66
TDP1Q9NUW8 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TDP1Q9NUW8 DRAXINP1-201ENST00000437611 948 ntBASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms