Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DDX28Q9NUL7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 CROCCP3-202ENST00000420820 1947 ntBASIC17.09■□□□□ 0.33
DDX28Q9NUL7 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.09■□□□□ 0.33
DDX28Q9NUL7 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
DDX28Q9NUL7 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
DDX28Q9NUL7 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
DDX28Q9NUL7 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
DDX28Q9NUL7 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.08■□□□□ 0.33
DDX28Q9NUL7 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
DDX28Q9NUL7 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
DDX28Q9NUL7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
DDX28Q9NUL7 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.08■□□□□ 0.33
DDX28Q9NUL7 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
DDX28Q9NUL7 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
DDX28Q9NUL7 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.08■□□□□ 0.32
DDX28Q9NUL7 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 AC009053.2-201ENST00000563701 2365 ntBASIC17.07■□□□□ 0.32
DDX28Q9NUL7 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 MIR4651-201ENST00000582622 73 ntBASIC17.07■□□□□ 0.32
DDX28Q9NUL7 AC120498.8-201ENST00000614275 531 ntBASIC17.07■□□□□ 0.32
DDX28Q9NUL7 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
DDX28Q9NUL7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms