Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AP003071.4-201ENST00000562276 1284 ntBASIC19.33■□□□□ 0.68
PCDH9Q9HC56 MIR4497-201ENST00000583208 89 ntBASIC19.33■□□□□ 0.68
PCDH9Q9HC56 MIR4785-201ENST00000585005 73 ntBASIC19.33■□□□□ 0.68
PCDH9Q9HC56 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 AC130371.2-201ENST00000619443 611 ntBASIC19.33■□□□□ 0.68
PCDH9Q9HC56 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PCDH9Q9HC56 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 AL162741.1-201ENST00000565563 1558 ntBASIC19.32■□□□□ 0.68
PCDH9Q9HC56 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 ABALON-201ENST00000629058 1903 ntBASIC19.32■□□□□ 0.68
PCDH9Q9HC56 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 AC008040.2-201ENST00000461049 708 ntBASIC19.32■□□□□ 0.68
PCDH9Q9HC56 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 REXO1L10P-201ENST00000615707 1290 ntBASIC19.32■□□□□ 0.68
PCDH9Q9HC56 REXO1L12P-201ENST00000622156 912 ntBASIC19.32■□□□□ 0.68
PCDH9Q9HC56 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 KRT8P32-201ENST00000512863 1461 ntBASIC19.32■□□□□ 0.68
PCDH9Q9HC56 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.32■□□□□ 0.68
PCDH9Q9HC56 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PCDH9Q9HC56 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 KRT17P2-201ENST00000300992 1314 ntBASIC19.3■□□□□ 0.68
PCDH9Q9HC56 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 FAM207BP-201ENST00000447172 505 ntBASIC19.3■□□□□ 0.68
PCDH9Q9HC56 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 KRT8P3-201ENST00000519669 1449 ntBASIC19.3■□□□□ 0.68
PCDH9Q9HC56 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
PCDH9Q9HC56 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 AL596275.1-201ENST00000423464 877 ntBASIC19.29■□□□□ 0.68
PCDH9Q9HC56 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PCDH9Q9HC56 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms