Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 NOP10-202ENST00000557912 436 ntTSL 2 BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 AC005412.1-201ENST00000580812 1049 ntBASIC20.72■□□□□ 0.91
RNF39Q9H2S5 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 LINC01965-201ENST00000412112 1378 ntTSL 3 BASIC20.72■□□□□ 0.91
RNF39Q9H2S5 MTND4P10-201ENST00000446199 1363 ntBASIC20.72■□□□□ 0.91
RNF39Q9H2S5 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 KRT8P45-201ENST00000414328 1447 ntBASIC20.71■□□□□ 0.91
RNF39Q9H2S5 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 AL353626.3-201ENST00000413399 657 ntBASIC20.71■□□□□ 0.91
RNF39Q9H2S5 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 TPRG1-AS2-201ENST00000425454 479 ntTSL 5 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 WBP1LP6-201ENST00000438434 424 ntBASIC20.71■□□□□ 0.91
RNF39Q9H2S5 SEPT7P2-208ENST00000444755 505 ntTSL 3 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 ELL2P2-201ENST00000515135 694 ntBASIC20.71■□□□□ 0.91
RNF39Q9H2S5 AC016727.1-205ENST00000605437 569 ntBASIC20.71■□□□□ 0.91
RNF39Q9H2S5 AC026585.1-201ENST00000619582 524 ntBASIC20.71■□□□□ 0.91
RNF39Q9H2S5 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF39Q9H2S5 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.91
RNF39Q9H2S5 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.7■□□□□ 0.91
RNF39Q9H2S5 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 IFNA13-202ENST00000610660 1539 ntAPPRIS P2 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 IL6-201ENST00000258743 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 AC011997.1-201ENST00000409845 1032 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 YBX1P2-201ENST00000489612 999 ntBASIC20.7■□□□□ 0.9
RNF39Q9H2S5 AC063952.2-201ENST00000498792 1227 ntBASIC20.7■□□□□ 0.9
RNF39Q9H2S5 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 CNIH1-203ENST00000553660 785 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 AL157871.5-201ENST00000555212 533 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 GBA3-207ENST00000613293 1233 ntTSL 5 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 AL359742.1-201ENST00000622497 540 ntBASIC20.7■□□□□ 0.9
RNF39Q9H2S5 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 AC011558.1-201ENST00000623459 338 ntBASIC20.7■□□□□ 0.9
RNF39Q9H2S5 AP000962.2-201ENST00000624971 1101 ntBASIC20.7■□□□□ 0.9
RNF39Q9H2S5 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF39Q9H2S5 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms