Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDT1Q9H211 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CDT1Q9H211 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.23■□□□□ 0.83
CDT1Q9H211 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDT1Q9H211 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.22■□□□□ 0.83
CDT1Q9H211 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CDT1Q9H211 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.22■□□□□ 0.83
CDT1Q9H211 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.22■□□□□ 0.83
CDT1Q9H211 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.22■□□□□ 0.83
CDT1Q9H211 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.22■□□□□ 0.83
CDT1Q9H211 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 HBZP1-201ENST00000354915 429 ntBASIC20.22■□□□□ 0.83
CDT1Q9H211 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 FAM86EP-206ENST00000510506 987 ntBASIC20.22■□□□□ 0.83
CDT1Q9H211 KRT18P41-201ENST00000518924 1277 ntBASIC20.22■□□□□ 0.83
CDT1Q9H211 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.22■□□□□ 0.83
CDT1Q9H211 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.22■□□□□ 0.83
CDT1Q9H211 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.22■□□□□ 0.83
CDT1Q9H211 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.22■□□□□ 0.83
CDT1Q9H211 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CDT1Q9H211 AL358472.4-201ENST00000633140 710 ntBASIC20.22■□□□□ 0.83
CDT1Q9H211 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CDT1Q9H211 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.22■□□□□ 0.83
CDT1Q9H211 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDT1Q9H211 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.22■□□□□ 0.83
CDT1Q9H211 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDT1Q9H211 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDT1Q9H211 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDT1Q9H211 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDT1Q9H211 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.21■□□□□ 0.83
CDT1Q9H211 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDT1Q9H211 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.21■□□□□ 0.83
CDT1Q9H211 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
CDT1Q9H211 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.21■□□□□ 0.83
CDT1Q9H211 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.21■□□□□ 0.83
CDT1Q9H211 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDT1Q9H211 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDT1Q9H211 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDT1Q9H211 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
CDT1Q9H211 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDT1Q9H211 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.21■□□□□ 0.83
CDT1Q9H211 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CDT1Q9H211 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.21■□□□□ 0.83
CDT1Q9H211 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.21■□□□□ 0.83
CDT1Q9H211 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.21■□□□□ 0.83
CDT1Q9H211 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDT1Q9H211 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDT1Q9H211 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CDT1Q9H211 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CDT1Q9H211 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.21■□□□□ 0.83
CDT1Q9H211 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.21■□□□□ 0.83
CDT1Q9H211 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CDT1Q9H211 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.2■□□□□ 0.82
CDT1Q9H211 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.2■□□□□ 0.82
CDT1Q9H211 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
CDT1Q9H211 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.2■□□□□ 0.82
CDT1Q9H211 ZNF444P1-201ENST00000559497 298 ntBASIC20.2■□□□□ 0.82
CDT1Q9H211 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.2■□□□□ 0.82
CDT1Q9H211 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.2■□□□□ 0.82
CDT1Q9H211 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CDT1Q9H211 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.2■□□□□ 0.82
CDT1Q9H211 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDT1Q9H211 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
CDT1Q9H211 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.19■□□□□ 0.82
CDT1Q9H211 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CDT1Q9H211 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.19■□□□□ 0.82
CDT1Q9H211 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.19■□□□□ 0.82
CDT1Q9H211 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDT1Q9H211 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms