Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.3■□□□□ 0.2
COL12A1Q99715 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL12A1Q99715 HLA-J-201ENST00000462773 1622 ntBASIC16.3■□□□□ 0.2
COL12A1Q99715 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL12A1Q99715 AC004817.3-201ENST00000602957 2129 ntBASIC16.3■□□□□ 0.2
COL12A1Q99715 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL12A1Q99715 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL12A1Q99715 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.3■□□□□ 0.2
COL12A1Q99715 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
COL12A1Q99715 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.3■□□□□ 0.2
COL12A1Q99715 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL12A1Q99715 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.29■□□□□ 0.2
COL12A1Q99715 AP005212.1-201ENST00000581547 1997 ntBASIC16.29■□□□□ 0.2
COL12A1Q99715 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL12A1Q99715 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.29■□□□□ 0.2
COL12A1Q99715 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL12A1Q99715 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.29■□□□□ 0.2
COL12A1Q99715 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL12A1Q99715 AC005034.1-201ENST00000426657 489 ntBASIC16.29■□□□□ 0.2
COL12A1Q99715 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.29■□□□□ 0.2
COL12A1Q99715 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.29■□□□□ 0.2
COL12A1Q99715 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL12A1Q99715 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL12A1Q99715 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL12A1Q99715 AL139400.1-201ENST00000366220 510 ntBASIC16.29■□□□□ 0.2
COL12A1Q99715 MCCD1P1-208ENST00000445732 328 ntBASIC16.29■□□□□ 0.2
COL12A1Q99715 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.29■□□□□ 0.2
COL12A1Q99715 AC093028.1-201ENST00000622998 982 ntBASIC16.29■□□□□ 0.2
COL12A1Q99715 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.29■□□□□ 0.2
COL12A1Q99715 AP005117.1-201ENST00000584346 1413 ntBASIC16.29■□□□□ 0.2
COL12A1Q99715 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC16.29■□□□□ 0.2
COL12A1Q99715 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL12A1Q99715 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
COL12A1Q99715 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.28■□□□□ 0.2
COL12A1Q99715 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
COL12A1Q99715 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.28■□□□□ 0.2
COL12A1Q99715 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.28■□□□□ 0.2
COL12A1Q99715 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL12A1Q99715 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL12A1Q99715 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
COL12A1Q99715 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
COL12A1Q99715 Z83851.2-201ENST00000609564 659 ntBASIC16.28■□□□□ 0.2
COL12A1Q99715 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.28■□□□□ 0.2
COL12A1Q99715 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.28■□□□□ 0.2
COL12A1Q99715 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
COL12A1Q99715 KRT8P3-201ENST00000519669 1449 ntBASIC16.28■□□□□ 0.2
COL12A1Q99715 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL12A1Q99715 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL12A1Q99715 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.27■□□□□ 0.2
COL12A1Q99715 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.27■□□□□ 0.2
COL12A1Q99715 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.27■□□□□ 0.2
COL12A1Q99715 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.27■□□□□ 0.2
COL12A1Q99715 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.27■□□□□ 0.2
COL12A1Q99715 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL12A1Q99715 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL12A1Q99715 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
COL12A1Q99715 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL12A1Q99715 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL12A1Q99715 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL12A1Q99715 POM121L3P-201ENST00000419331 1163 ntBASIC16.27■□□□□ 0.2
COL12A1Q99715 GAPDHP21-201ENST00000450301 1010 ntBASIC16.27■□□□□ 0.2
COL12A1Q99715 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.27■□□□□ 0.2
COL12A1Q99715 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL12A1Q99715 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
COL12A1Q99715 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
COL12A1Q99715 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.27■□□□□ 0.19
COL12A1Q99715 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL12A1Q99715 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
COL12A1Q99715 AC063926.2-201ENST00000623766 1308 ntBASIC16.27■□□□□ 0.19
COL12A1Q99715 GK-202ENST00000378941 458 ntTSL 3 BASIC16.27■□□□□ 0.19
COL12A1Q99715 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.27■□□□□ 0.19
COL12A1Q99715 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.27■□□□□ 0.19
COL12A1Q99715 DUX4L17-201ENST00000557360 1267 ntBASIC16.27■□□□□ 0.19
COL12A1Q99715 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.27■□□□□ 0.19
COL12A1Q99715 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.27■□□□□ 0.19
COL12A1Q99715 AC093512.1-201ENST00000617969 520 ntBASIC16.27■□□□□ 0.19
COL12A1Q99715 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.26■□□□□ 0.19
COL12A1Q99715 SDHAP1-207ENST00000440850 2000 ntBASIC16.26■□□□□ 0.19
COL12A1Q99715 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL12A1Q99715 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.26■□□□□ 0.19
COL12A1Q99715 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.26■□□□□ 0.19
COL12A1Q99715 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.26■□□□□ 0.19
COL12A1Q99715 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.26■□□□□ 0.19
COL12A1Q99715 AC005829.1-201ENST00000570002 483 ntBASIC16.26■□□□□ 0.19
COL12A1Q99715 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.26■□□□□ 0.19
COL12A1Q99715 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL12A1Q99715 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL12A1Q99715 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.26■□□□□ 0.19
COL12A1Q99715 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL12A1Q99715 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.26■□□□□ 0.19
COL12A1Q99715 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL12A1Q99715 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL12A1Q99715 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
COL12A1Q99715 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.26■□□□□ 0.19
COL12A1Q99715 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.26■□□□□ 0.19
COL12A1Q99715 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.26■□□□□ 0.19
COL12A1Q99715 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
COL12A1Q99715 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
COL12A1Q99715 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
COL12A1Q99715 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms