Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTCHD1Q96NR3 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
PTCHD1Q96NR3 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTCHD1Q96NR3 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTCHD1Q96NR3 AC036111.1-201ENST00000533973 1582 ntBASIC17.61■□□□□ 0.41
PTCHD1Q96NR3 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTCHD1Q96NR3 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
PTCHD1Q96NR3 AL109659.2-201ENST00000606809 1674 ntBASIC17.61■□□□□ 0.41
PTCHD1Q96NR3 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTCHD1Q96NR3 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PTCHD1Q96NR3 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PTCHD1Q96NR3 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 AC008556.1-201ENST00000610908 2040 ntBASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 AC009947.2-201ENST00000444014 672 ntBASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 AC104076.2-201ENST00000448912 469 ntBASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 COX11P1-201ENST00000489116 835 ntBASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 WWOX-216ENST00000569818 525 ntBASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 AC140113.3-201ENST00000605663 199 ntBASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
PTCHD1Q96NR3 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 AC139887.4-201ENST00000607877 719 ntBASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PTCHD1Q96NR3 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PTCHD1Q96NR3 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.58■□□□□ 0.41
PTCHD1Q96NR3 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTCHD1Q96NR3 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PTCHD1Q96NR3 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTCHD1Q96NR3 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PTCHD1Q96NR3 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
PTCHD1Q96NR3 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.58■□□□□ 0.41
PTCHD1Q96NR3 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
PTCHD1Q96NR3 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.58■□□□□ 0.41
PTCHD1Q96NR3 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.58■□□□□ 0.41
PTCHD1Q96NR3 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 AK4P3-201ENST00000418260 669 ntBASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PTCHD1Q96NR3 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms