Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.79■□□□□ 0.28
PTP4A1Q93096 AC124016.1-201ENST00000609552 612 ntBASIC16.79■□□□□ 0.28
PTP4A1Q93096 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTP4A1Q93096 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
PTP4A1Q93096 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.79■□□□□ 0.28
PTP4A1Q93096 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PTP4A1Q93096 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTP4A1Q93096 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PTP4A1Q93096 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PTP4A1Q93096 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PTP4A1Q93096 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.79■□□□□ 0.28
PTP4A1Q93096 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.79■□□□□ 0.28
PTP4A1Q93096 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
PTP4A1Q93096 KRT8P3-201ENST00000519669 1449 ntBASIC16.79■□□□□ 0.28
PTP4A1Q93096 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 RPPH1-201ENST00000516869 333 ntBASIC16.78■□□□□ 0.28
PTP4A1Q93096 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 AC135776.1-201ENST00000319817 2481 ntBASIC16.78■□□□□ 0.28
PTP4A1Q93096 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.78■□□□□ 0.28
PTP4A1Q93096 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PTP4A1Q93096 AL357033.4-201ENST00000617703 1807 ntBASIC16.77■□□□□ 0.28
PTP4A1Q93096 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTP4A1Q93096 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTP4A1Q93096 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTP4A1Q93096 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTP4A1Q93096 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTP4A1Q93096 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTP4A1Q93096 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTP4A1Q93096 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 AL445675.2-201ENST00000620291 557 ntBASIC16.77■□□□□ 0.28
PTP4A1Q93096 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PTP4A1Q93096 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.77■□□□□ 0.28
PTP4A1Q93096 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PTP4A1Q93096 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTP4A1Q93096 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTP4A1Q93096 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTP4A1Q93096 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.77■□□□□ 0.27
PTP4A1Q93096 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTP4A1Q93096 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PTP4A1Q93096 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTP4A1Q93096 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.76■□□□□ 0.27
PTP4A1Q93096 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTP4A1Q93096 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTP4A1Q93096 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.76■□□□□ 0.27
PTP4A1Q93096 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTP4A1Q93096 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTP4A1Q93096 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTP4A1Q93096 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTP4A1Q93096 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTP4A1Q93096 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PTP4A1Q93096 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTP4A1Q93096 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTP4A1Q93096 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.76■□□□□ 0.27
PTP4A1Q93096 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
PTP4A1Q93096 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PTP4A1Q93096 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC16.76■□□□□ 0.27
PTP4A1Q93096 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
PTP4A1Q93096 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms