Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
VPS52Q8N1B4 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.23■□□□□ 0.83
VPS52Q8N1B4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 TSPY21P-201ENST00000433481 731 ntBASIC20.23■□□□□ 0.83
VPS52Q8N1B4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 SPDYE13P-201ENST00000445314 798 ntBASIC20.23■□□□□ 0.83
VPS52Q8N1B4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS52Q8N1B4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 SDHAP1-207ENST00000440850 2000 ntBASIC20.22■□□□□ 0.83
VPS52Q8N1B4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 HBZP1-201ENST00000354915 429 ntBASIC20.22■□□□□ 0.83
VPS52Q8N1B4 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 RASA4DP-201ENST00000460726 1199 ntBASIC20.22■□□□□ 0.83
VPS52Q8N1B4 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS52Q8N1B4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 ATP5G2P1-201ENST00000433580 426 ntBASIC20.21■□□□□ 0.83
VPS52Q8N1B4 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 AC034232.1-201ENST00000506026 1064 ntBASIC20.21■□□□□ 0.83
VPS52Q8N1B4 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 GPAT2P1-201ENST00000444924 1672 ntBASIC20.21■□□□□ 0.83
VPS52Q8N1B4 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS52Q8N1B4 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
VPS52Q8N1B4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS52Q8N1B4 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms