Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 KRT18P31-201ENST00000506277 1292 ntBASIC17.94■□□□□ 0.46
COL28A1Q2UY09 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 AP000867.3-201ENST00000524675 377 ntBASIC17.94■□□□□ 0.46
COL28A1Q2UY09 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.94■□□□□ 0.46
COL28A1Q2UY09 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 TSPY12P-201ENST00000421279 868 ntBASIC17.93■□□□□ 0.46
COL28A1Q2UY09 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL28A1Q2UY09 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 AL355385.1-201ENST00000606123 409 ntBASIC17.92■□□□□ 0.46
COL28A1Q2UY09 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
COL28A1Q2UY09 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 CHCHD2P8-201ENST00000429873 447 ntBASIC17.91■□□□□ 0.46
COL28A1Q2UY09 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL28A1Q2UY09 KRT8P26-201ENST00000534154 1276 ntBASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms