Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN1P58418 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
CLRN1P58418 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CLRN1P58418 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
CLRN1P58418 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CLRN1P58418 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CLRN1P58418 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN1P58418 TSPY7P-201ENST00000431358 1114 ntBASIC16.71■□□□□ 0.27
CLRN1P58418 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN1P58418 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN1P58418 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.71■□□□□ 0.27
CLRN1P58418 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN1P58418 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.71■□□□□ 0.27
CLRN1P58418 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN1P58418 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN1P58418 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN1P58418 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN1P58418 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN1P58418 KRT8P32-201ENST00000512863 1461 ntBASIC16.71■□□□□ 0.27
CLRN1P58418 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.71■□□□□ 0.27
CLRN1P58418 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN1P58418 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.71■□□□□ 0.27
CLRN1P58418 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLRN1P58418 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.7■□□□□ 0.26
CLRN1P58418 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.7■□□□□ 0.26
CLRN1P58418 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CLRN1P58418 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.7■□□□□ 0.26
CLRN1P58418 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC16.7■□□□□ 0.26
CLRN1P58418 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
CLRN1P58418 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 UNC93B2-201ENST00000285383 730 ntBASIC16.7■□□□□ 0.26
CLRN1P58418 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
CLRN1P58418 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.7■□□□□ 0.26
CLRN1P58418 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.7■□□□□ 0.26
CLRN1P58418 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.7■□□□□ 0.26
CLRN1P58418 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.7■□□□□ 0.26
CLRN1P58418 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.7■□□□□ 0.26
CLRN1P58418 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC16.7■□□□□ 0.26
CLRN1P58418 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.7■□□□□ 0.26
CLRN1P58418 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.7■□□□□ 0.26
CLRN1P58418 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.7■□□□□ 0.26
CLRN1P58418 AC068587.9-201ENST00000641814 219 ntBASIC16.7■□□□□ 0.26
CLRN1P58418 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.7■□□□□ 0.26
CLRN1P58418 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 RCC2P3-201ENST00000418112 1537 ntBASIC16.7■□□□□ 0.26
CLRN1P58418 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC16.7■□□□□ 0.26
CLRN1P58418 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLRN1P58418 WIZP1-201ENST00000531444 2299 ntBASIC16.7■□□□□ 0.26
CLRN1P58418 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CLRN1P58418 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC16.69■□□□□ 0.26
CLRN1P58418 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CLRN1P58418 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.69■□□□□ 0.26
CLRN1P58418 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.69■□□□□ 0.26
CLRN1P58418 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.69■□□□□ 0.26
CLRN1P58418 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.69■□□□□ 0.26
CLRN1P58418 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.69■□□□□ 0.26
CLRN1P58418 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.69■□□□□ 0.26
CLRN1P58418 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.69■□□□□ 0.26
CLRN1P58418 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.69■□□□□ 0.26
CLRN1P58418 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.69■□□□□ 0.26
CLRN1P58418 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
CLRN1P58418 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
CLRN1P58418 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLRN1P58418 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.69■□□□□ 0.26
CLRN1P58418 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.68■□□□□ 0.26
CLRN1P58418 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.68■□□□□ 0.26
CLRN1P58418 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CLRN1P58418 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CLRN1P58418 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms