Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CDH6P55285 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CDH6P55285 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CDH6P55285 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH6P55285 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH6P55285 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDH6P55285 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.45■□□□□ 0.7
CDH6P55285 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH6P55285 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.45■□□□□ 0.7
CDH6P55285 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH6P55285 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDH6P55285 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.45■□□□□ 0.7
CDH6P55285 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
CDH6P55285 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDH6P55285 AC093827.2-201ENST00000512654 315 ntBASIC19.45■□□□□ 0.7
CDH6P55285 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CDH6P55285 MIR4497-201ENST00000583208 89 ntBASIC19.45■□□□□ 0.7
CDH6P55285 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CDH6P55285 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.45■□□□□ 0.7
CDH6P55285 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH6P55285 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.45■□□□□ 0.7
CDH6P55285 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CDH6P55285 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.45■□□□□ 0.7
CDH6P55285 KRT17P2-201ENST00000300992 1314 ntBASIC19.45■□□□□ 0.7
CDH6P55285 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
CDH6P55285 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CDH6P55285 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH6P55285 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.45■□□□□ 0.7
CDH6P55285 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CDH6P55285 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CDH6P55285 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.44■□□□□ 0.7
CDH6P55285 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.44■□□□□ 0.7
CDH6P55285 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.44■□□□□ 0.7
CDH6P55285 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
CDH6P55285 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.44■□□□□ 0.7
CDH6P55285 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CDH6P55285 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CDH6P55285 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CDH6P55285 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.44■□□□□ 0.7
CDH6P55285 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.44■□□□□ 0.7
CDH6P55285 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CDH6P55285 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 AC066615.1-201ENST00000640911 628 ntBASIC19.44■□□□□ 0.7
CDH6P55285 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.44■□□□□ 0.7
CDH6P55285 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CDH6P55285 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.43■□□□□ 0.7
CDH6P55285 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 UNC93B2-201ENST00000285383 730 ntBASIC19.43■□□□□ 0.7
CDH6P55285 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 RBM17P1-201ENST00000453646 1190 ntBASIC19.43■□□□□ 0.7
CDH6P55285 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
CDH6P55285 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CDH6P55285 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.43■□□□□ 0.7
CDH6P55285 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CDH6P55285 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.43■□□□□ 0.7
CDH6P55285 AC008556.1-201ENST00000610908 2040 ntBASIC19.42■□□□□ 0.7
CDH6P55285 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH6P55285 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH6P55285 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH6P55285 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
CDH6P55285 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH6P55285 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH6P55285 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.42■□□□□ 0.7
CDH6P55285 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CDH6P55285 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH6P55285 CA15P1-201ENST00000481698 905 ntBASIC19.42■□□□□ 0.7
CDH6P55285 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CDH6P55285 AP005242.2-201ENST00000580065 1175 ntBASIC19.42■□□□□ 0.7
CDH6P55285 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.42■□□□□ 0.7
CDH6P55285 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CDH6P55285 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms