Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
LIMK1P53667 AC074051.2-201ENST00000565115 352 ntBASIC18.45■□□□□ 0.54
LIMK1P53667 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
LIMK1P53667 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.45■□□□□ 0.54
LIMK1P53667 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMK1P53667 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.45■□□□□ 0.54
LIMK1P53667 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
LIMK1P53667 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMK1P53667 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMK1P53667 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIMK1P53667 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.44■□□□□ 0.54
LIMK1P53667 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.44■□□□□ 0.54
LIMK1P53667 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.44■□□□□ 0.54
LIMK1P53667 AC092720.2-201ENST00000602388 1665 ntBASIC18.44■□□□□ 0.54
LIMK1P53667 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.44■□□□□ 0.54
LIMK1P53667 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.44■□□□□ 0.54
LIMK1P53667 SEC1P-202ENST00000473944 940 ntBASIC18.44■□□□□ 0.54
LIMK1P53667 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.44■□□□□ 0.54
LIMK1P53667 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.44■□□□□ 0.54
LIMK1P53667 RNF126P1-202ENST00000569893 925 ntBASIC18.44■□□□□ 0.54
LIMK1P53667 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.44■□□□□ 0.54
LIMK1P53667 REXO1L6P-202ENST00000619970 1078 ntBASIC18.44■□□□□ 0.54
LIMK1P53667 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LIMK1P53667 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
LIMK1P53667 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
LIMK1P53667 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
LIMK1P53667 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
LIMK1P53667 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.43■□□□□ 0.54
LIMK1P53667 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.43■□□□□ 0.54
LIMK1P53667 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
LIMK1P53667 Z69720.1-201ENST00000601483 472 ntBASIC18.43■□□□□ 0.54
LIMK1P53667 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.43■□□□□ 0.54
LIMK1P53667 AL773604.1-201ENST00000617417 272 ntBASIC18.43■□□□□ 0.54
LIMK1P53667 AP000974.1-201ENST00000623909 2387 ntBASIC18.43■□□□□ 0.54
LIMK1P53667 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.43■□□□□ 0.54
LIMK1P53667 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.43■□□□□ 0.54
LIMK1P53667 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LIMK1P53667 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMK1P53667 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMK1P53667 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
LIMK1P53667 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMK1P53667 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.42■□□□□ 0.54
LIMK1P53667 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.42■□□□□ 0.54
LIMK1P53667 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.42■□□□□ 0.54
LIMK1P53667 RNPS1P1-201ENST00000507437 918 ntBASIC18.42■□□□□ 0.54
LIMK1P53667 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.42■□□□□ 0.54
LIMK1P53667 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.42■□□□□ 0.54
LIMK1P53667 MIR3917-201ENST00000580971 93 ntBASIC18.42■□□□□ 0.54
LIMK1P53667 AC099336.1-202ENST00000602961 463 ntBASIC18.42■□□□□ 0.54
LIMK1P53667 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.42■□□□□ 0.54
LIMK1P53667 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.42■□□□□ 0.54
LIMK1P53667 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMK1P53667 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMK1P53667 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMK1P53667 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LIMK1P53667 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.42■□□□□ 0.54
LIMK1P53667 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.42■□□□□ 0.54
LIMK1P53667 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMK1P53667 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMK1P53667 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMK1P53667 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMK1P53667 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LIMK1P53667 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMK1P53667 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LIMK1P53667 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMK1P53667 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LIMK1P53667 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMK1P53667 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.41■□□□□ 0.54
LIMK1P53667 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LIMK1P53667 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.41■□□□□ 0.54
LIMK1P53667 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
LIMK1P53667 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms