Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
PTPN9P43378 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 KRT8P50-201ENST00000562022 1438 ntBASIC19.41■□□□□ 0.7
PTPN9P43378 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTPN9P43378 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
PTPN9P43378 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.4■□□□□ 0.7
PTPN9P43378 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.4■□□□□ 0.7
PTPN9P43378 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
PTPN9P43378 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
PTPN9P43378 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN9P43378 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN9P43378 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN9P43378 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.4■□□□□ 0.7
PTPN9P43378 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN9P43378 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN9P43378 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.4■□□□□ 0.7
PTPN9P43378 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.4■□□□□ 0.7
PTPN9P43378 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.4■□□□□ 0.7
PTPN9P43378 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN9P43378 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.4■□□□□ 0.7
PTPN9P43378 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.4■□□□□ 0.7
PTPN9P43378 AC097493.4-201ENST00000641197 219 ntBASIC19.4■□□□□ 0.7
PTPN9P43378 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN9P43378 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
PTPN9P43378 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTPN9P43378 AC090164.3-201ENST00000610780 2143 ntBASIC19.4■□□□□ 0.7
PTPN9P43378 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
PTPN9P43378 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.4■□□□□ 0.7
PTPN9P43378 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.4■□□□□ 0.7
PTPN9P43378 MYLKP1-201ENST00000509077 1580 ntBASIC19.4■□□□□ 0.7
PTPN9P43378 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.39■□□□□ 0.7
PTPN9P43378 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PTPN9P43378 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
PTPN9P43378 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
PTPN9P43378 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.39■□□□□ 0.7
PTPN9P43378 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN9P43378 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PTPN9P43378 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.39■□□□□ 0.69
PTPN9P43378 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN9P43378 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN9P43378 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN9P43378 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.39■□□□□ 0.69
PTPN9P43378 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.39■□□□□ 0.69
PTPN9P43378 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.39■□□□□ 0.69
PTPN9P43378 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.39■□□□□ 0.69
PTPN9P43378 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PTPN9P43378 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN9P43378 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN9P43378 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN9P43378 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN9P43378 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN9P43378 AIRN-201ENST00000601203 4374 ntBASIC19.39■□□□□ 0.69
PTPN9P43378 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PTPN9P43378 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.39■□□□□ 0.69
PTPN9P43378 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.39■□□□□ 0.69
PTPN9P43378 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
PTPN9P43378 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
PTPN9P43378 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
PTPN9P43378 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
PTPN9P43378 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.38■□□□□ 0.69
PTPN9P43378 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
PTPN9P43378 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.38■□□□□ 0.69
PTPN9P43378 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.38■□□□□ 0.69
PTPN9P43378 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTPN9P43378 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
PTPN9P43378 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.37■□□□□ 0.69
PTPN9P43378 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.37■□□□□ 0.69
PTPN9P43378 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
PTPN9P43378 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
PTPN9P43378 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.37■□□□□ 0.69
PTPN9P43378 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.37■□□□□ 0.69
PTPN9P43378 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTPN9P43378 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms