Protein–RNA interactions for Protein: P26640

VARS, Valine--tRNA ligase, humanhuman

Known RBP Predictions only

Length 1,264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARSP26640 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
VARSP26640 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VARSP26640 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.37■□□□□ 0.53
VARSP26640 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VARSP26640 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VARSP26640 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VARSP26640 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VARSP26640 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VARSP26640 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VARSP26640 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
VARSP26640 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VARSP26640 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.36■□□□□ 0.53
VARSP26640 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.36■□□□□ 0.53
VARSP26640 AC004951.3-201ENST00000418645 1148 ntBASIC18.36■□□□□ 0.53
VARSP26640 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.36■□□□□ 0.53
VARSP26640 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.36■□□□□ 0.53
VARSP26640 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VARSP26640 AC026271.3-201ENST00000571884 352 ntBASIC18.36■□□□□ 0.53
VARSP26640 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.36■□□□□ 0.53
VARSP26640 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.36■□□□□ 0.53
VARSP26640 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VARSP26640 AC104581.1-202ENST00000635932 2618 ntBASIC18.36■□□□□ 0.53
VARSP26640 AC092865.7-201ENST00000641832 219 ntBASIC18.36■□□□□ 0.53
VARSP26640 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VARSP26640 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
VARSP26640 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VARSP26640 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VARSP26640 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.35■□□□□ 0.53
VARSP26640 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VARSP26640 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.35■□□□□ 0.53
VARSP26640 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.35■□□□□ 0.53
VARSP26640 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 MESTP1-201ENST00000404287 994 ntBASIC18.35■□□□□ 0.53
VARSP26640 B3GAT3P1-201ENST00000471720 806 ntBASIC18.35■□□□□ 0.53
VARSP26640 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.35■□□□□ 0.53
VARSP26640 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.35■□□□□ 0.53
VARSP26640 MIR6786-201ENST00000616843 113 ntBASIC18.35■□□□□ 0.53
VARSP26640 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
VARSP26640 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
VARSP26640 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.35■□□□□ 0.53
VARSP26640 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.35■□□□□ 0.53
VARSP26640 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
VARSP26640 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.35■□□□□ 0.53
VARSP26640 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VARSP26640 Z98044.1-201ENST00000632503 1764 ntBASIC18.35■□□□□ 0.53
VARSP26640 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.34■□□□□ 0.53
VARSP26640 AC009113.1-201ENST00000570267 2443 ntBASIC18.34■□□□□ 0.53
VARSP26640 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
VARSP26640 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
VARSP26640 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 ARMC10P1-201ENST00000313754 855 ntBASIC18.34■□□□□ 0.53
VARSP26640 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.34■□□□□ 0.53
VARSP26640 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.34■□□□□ 0.53
VARSP26640 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.34■□□□□ 0.53
VARSP26640 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VARSP26640 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.34■□□□□ 0.53
VARSP26640 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
VARSP26640 AL049597.2-201ENST00000565575 961 ntBASIC18.34■□□□□ 0.53
VARSP26640 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.34■□□□□ 0.53
VARSP26640 AL445228.2-201ENST00000605589 952 ntBASIC18.34■□□□□ 0.53
VARSP26640 AC005363.2-201ENST00000618631 242 ntBASIC18.34■□□□□ 0.53
VARSP26640 AC130371.2-201ENST00000619443 611 ntBASIC18.34■□□□□ 0.53
VARSP26640 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.34■□□□□ 0.53
VARSP26640 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.34■□□□□ 0.53
VARSP26640 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.34■□□□□ 0.53
VARSP26640 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.34■□□□□ 0.53
VARSP26640 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VARSP26640 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VARSP26640 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VARSP26640 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.33■□□□□ 0.53
VARSP26640 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
VARSP26640 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms