Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
MSH3P20585 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
MSH3P20585 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
MSH3P20585 AC006333.2-201ENST00000607957 2099 ntBASIC18.59■□□□□ 0.57
MSH3P20585 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
MSH3P20585 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
MSH3P20585 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 HMGA1P5-201ENST00000412453 271 ntBASIC18.59■□□□□ 0.57
MSH3P20585 ECEL1P3-201ENST00000427961 737 ntBASIC18.59■□□□□ 0.57
MSH3P20585 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.59■□□□□ 0.57
MSH3P20585 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.59■□□□□ 0.57
MSH3P20585 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.59■□□□□ 0.57
MSH3P20585 FAM87A-204ENST00000613235 858 ntBASIC18.59■□□□□ 0.57
MSH3P20585 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.59■□□□□ 0.57
MSH3P20585 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.59■□□□□ 0.57
MSH3P20585 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
MSH3P20585 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
MSH3P20585 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.59■□□□□ 0.57
MSH3P20585 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
MSH3P20585 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSH3P20585 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MSH3P20585 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
MSH3P20585 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.58■□□□□ 0.57
MSH3P20585 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.57
MSH3P20585 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
MSH3P20585 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MSH3P20585 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MSH3P20585 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
MSH3P20585 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
MSH3P20585 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
MSH3P20585 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSH3P20585 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.58■□□□□ 0.56
MSH3P20585 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSH3P20585 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSH3P20585 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.58■□□□□ 0.56
MSH3P20585 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
MSH3P20585 AC012306.2-201ENST00000609350 630 ntBASIC18.58■□□□□ 0.56
MSH3P20585 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSH3P20585 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.58■□□□□ 0.56
MSH3P20585 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSH3P20585 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
MSH3P20585 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSH3P20585 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
MSH3P20585 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
MSH3P20585 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.58■□□□□ 0.56
MSH3P20585 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.58■□□□□ 0.56
MSH3P20585 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
MSH3P20585 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.57■□□□□ 0.56
MSH3P20585 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
MSH3P20585 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
MSH3P20585 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.57■□□□□ 0.56
MSH3P20585 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.57■□□□□ 0.56
MSH3P20585 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.57■□□□□ 0.56
MSH3P20585 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.57■□□□□ 0.56
MSH3P20585 MIR4674-201ENST00000582457 87 ntBASIC18.57■□□□□ 0.56
MSH3P20585 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.57■□□□□ 0.56
MSH3P20585 AC005363.2-201ENST00000618631 242 ntBASIC18.57■□□□□ 0.56
MSH3P20585 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.57■□□□□ 0.56
MSH3P20585 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.57■□□□□ 0.56
MSH3P20585 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.57■□□□□ 0.56
MSH3P20585 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
MSH3P20585 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSH3P20585 HEIH-201ENST00000623091 1652 ntBASIC18.57■□□□□ 0.56
MSH3P20585 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH3P20585 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
MSH3P20585 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH3P20585 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH3P20585 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.56■□□□□ 0.56
MSH3P20585 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH3P20585 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH3P20585 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH3P20585 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MSH3P20585 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MSH3P20585 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.56■□□□□ 0.56
MSH3P20585 LIN28AP1-201ENST00000429574 405 ntBASIC18.56■□□□□ 0.56
MSH3P20585 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.56■□□□□ 0.56
MSH3P20585 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms