Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PDGFAP04085 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PDGFAP04085 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
PDGFAP04085 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.45■□□□□ 0.38
PDGFAP04085 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.45■□□□□ 0.38
PDGFAP04085 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PDGFAP04085 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
PDGFAP04085 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.45■□□□□ 0.38
PDGFAP04085 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.45■□□□□ 0.38
PDGFAP04085 RASA4DP-201ENST00000460726 1199 ntBASIC17.45■□□□□ 0.38
PDGFAP04085 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.45■□□□□ 0.38
PDGFAP04085 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.45■□□□□ 0.38
PDGFAP04085 RN7SL510P-201ENST00000581311 263 ntBASIC17.45■□□□□ 0.38
PDGFAP04085 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.45■□□□□ 0.38
PDGFAP04085 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
PDGFAP04085 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.45■□□□□ 0.38
PDGFAP04085 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
PDGFAP04085 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
PDGFAP04085 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.45■□□□□ 0.38
PDGFAP04085 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
PDGFAP04085 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.45■□□□□ 0.38
PDGFAP04085 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PDGFAP04085 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.45■□□□□ 0.38
PDGFAP04085 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.44■□□□□ 0.38
PDGFAP04085 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.44■□□□□ 0.38
PDGFAP04085 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.44■□□□□ 0.38
PDGFAP04085 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 FZD10-202ENST00000539839 3282 ntBASIC17.44■□□□□ 0.38
PDGFAP04085 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
PDGFAP04085 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.44■□□□□ 0.38
PDGFAP04085 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.44■□□□□ 0.38
PDGFAP04085 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.44■□□□□ 0.38
PDGFAP04085 MIR3652-201ENST00000579335 131 ntBASIC17.44■□□□□ 0.38
PDGFAP04085 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.44■□□□□ 0.38
PDGFAP04085 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PDGFAP04085 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PDGFAP04085 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 AC009237.14-201ENST00000609975 1594 ntBASIC17.44■□□□□ 0.38
PDGFAP04085 AP005212.1-201ENST00000581547 1997 ntBASIC17.44■□□□□ 0.38
PDGFAP04085 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PDGFAP04085 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PDGFAP04085 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PDGFAP04085 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.44■□□□□ 0.38
PDGFAP04085 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PDGFAP04085 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
PDGFAP04085 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.43■□□□□ 0.38
PDGFAP04085 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.43■□□□□ 0.38
PDGFAP04085 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.43■□□□□ 0.38
PDGFAP04085 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
PDGFAP04085 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.43■□□□□ 0.38
PDGFAP04085 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.43■□□□□ 0.38
PDGFAP04085 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.43■□□□□ 0.38
PDGFAP04085 PRELID1P1-202ENST00000567272 903 ntBASIC17.43■□□□□ 0.38
PDGFAP04085 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.43■□□□□ 0.38
PDGFAP04085 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.43■□□□□ 0.38
PDGFAP04085 AC092329.2-201ENST00000598402 547 ntBASIC17.43■□□□□ 0.38
PDGFAP04085 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
PDGFAP04085 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms