Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SPTA1P02549 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SPTA1P02549 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SPTA1P02549 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SPTA1P02549 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SPTA1P02549 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.9■□□□□ 0.3
SPTA1P02549 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.9■□□□□ 0.3
SPTA1P02549 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SPTA1P02549 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SPTA1P02549 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.9■□□□□ 0.3
SPTA1P02549 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
SPTA1P02549 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SPTA1P02549 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SPTA1P02549 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.9■□□□□ 0.3
SPTA1P02549 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SPTA1P02549 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SPTA1P02549 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.89■□□□□ 0.29
SPTA1P02549 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.89■□□□□ 0.29
SPTA1P02549 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.89■□□□□ 0.29
SPTA1P02549 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.89■□□□□ 0.29
SPTA1P02549 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
SPTA1P02549 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
SPTA1P02549 AL109659.2-201ENST00000606809 1674 ntBASIC16.89■□□□□ 0.29
SPTA1P02549 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.89■□□□□ 0.29
SPTA1P02549 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.89■□□□□ 0.29
SPTA1P02549 AL355877.3-201ENST00000622820 899 ntBASIC16.89■□□□□ 0.29
SPTA1P02549 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.89■□□□□ 0.29
SPTA1P02549 KRT8P7-201ENST00000533003 1432 ntBASIC16.89■□□□□ 0.29
SPTA1P02549 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.89■□□□□ 0.29
SPTA1P02549 SCARNA2-201ENST00000458748 420 ntBASIC16.89■□□□□ 0.29
SPTA1P02549 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.89■□□□□ 0.29
SPTA1P02549 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.89■□□□□ 0.29
SPTA1P02549 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.89■□□□□ 0.29
SPTA1P02549 AL356488.2-201ENST00000602755 427 ntBASIC16.89■□□□□ 0.29
SPTA1P02549 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.89■□□□□ 0.29
SPTA1P02549 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SPTA1P02549 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SPTA1P02549 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.88■□□□□ 0.29
SPTA1P02549 HNRNPDP1-201ENST00000439535 754 ntBASIC16.88■□□□□ 0.29
SPTA1P02549 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.88■□□□□ 0.29
SPTA1P02549 AC011840.4-201ENST00000578471 627 ntBASIC16.88■□□□□ 0.29
SPTA1P02549 AC092364.2-202ENST00000597012 1073 ntBASIC16.88■□□□□ 0.29
SPTA1P02549 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SPTA1P02549 MIR7706-201ENST00000613747 67 ntBASIC16.88■□□□□ 0.29
SPTA1P02549 AC099343.3-201ENST00000605834 2503 ntBASIC16.88■□□□□ 0.29
SPTA1P02549 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SPTA1P02549 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SPTA1P02549 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SPTA1P02549 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
SPTA1P02549 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SPTA1P02549 AC092667.1-201ENST00000434301 2586 ntBASIC16.88■□□□□ 0.29
SPTA1P02549 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SPTA1P02549 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SPTA1P02549 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.88■□□□□ 0.29
SPTA1P02549 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.88■□□□□ 0.29
SPTA1P02549 MINOS1P3-201ENST00000457048 203 ntBASIC16.88■□□□□ 0.29
SPTA1P02549 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.88■□□□□ 0.29
SPTA1P02549 AC106730.1-201ENST00000566722 1090 ntBASIC16.88■□□□□ 0.29
SPTA1P02549 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.88■□□□□ 0.29
SPTA1P02549 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.88■□□□□ 0.29
SPTA1P02549 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SPTA1P02549 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SPTA1P02549 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SPTA1P02549 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
SPTA1P02549 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SPTA1P02549 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
SPTA1P02549 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC16.87■□□□□ 0.29
SPTA1P02549 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
SPTA1P02549 LINC00565-201ENST00000562710 2331 ntBASIC16.87■□□□□ 0.29
SPTA1P02549 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SPTA1P02549 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SPTA1P02549 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SPTA1P02549 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.87■□□□□ 0.29
SPTA1P02549 MED15P5-201ENST00000423150 992 ntBASIC16.87■□□□□ 0.29
SPTA1P02549 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.87■□□□□ 0.29
SPTA1P02549 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.87■□□□□ 0.29
SPTA1P02549 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.87■□□□□ 0.29
SPTA1P02549 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.87■□□□□ 0.29
SPTA1P02549 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SPTA1P02549 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SPTA1P02549 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC16.87■□□□□ 0.29
SPTA1P02549 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SPTA1P02549 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SPTA1P02549 AC104109.2-201ENST00000602919 1418 ntBASIC16.87■□□□□ 0.29
SPTA1P02549 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.87■□□□□ 0.29
SPTA1P02549 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SPTA1P02549 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms