Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC8.32□□□□□ -1.08
USH2AO75445 KRT8P3-201ENST00000519669 1449 ntBASIC8.32□□□□□ -1.08
USH2AO75445 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC8.32□□□□□ -1.08
USH2AO75445 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC8.32□□□□□ -1.08
USH2AO75445 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC8.32□□□□□ -1.08
USH2AO75445 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC8.32□□□□□ -1.08
USH2AO75445 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC8.32□□□□□ -1.08
USH2AO75445 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC8.32□□□□□ -1.08
USH2AO75445 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC8.32□□□□□ -1.08
USH2AO75445 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC8.32□□□□□ -1.08
USH2AO75445 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC8.32□□□□□ -1.08
USH2AO75445 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
USH2AO75445 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC8.32□□□□□ -1.08
USH2AO75445 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC8.32□□□□□ -1.08
USH2AO75445 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 KRT18P2-201ENST00000447938 1258 ntBASIC8.32□□□□□ -1.08
USH2AO75445 AP002472.1-201ENST00000577490 586 ntBASIC8.32□□□□□ -1.08
USH2AO75445 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC8.32□□□□□ -1.08
USH2AO75445 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC8.32□□□□□ -1.08
USH2AO75445 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
USH2AO75445 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC8.31□□□□□ -1.08
USH2AO75445 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC8.31□□□□□ -1.08
USH2AO75445 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC8.31□□□□□ -1.08
USH2AO75445 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC8.31□□□□□ -1.08
USH2AO75445 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 INTS4P1-201ENST00000438455 1935 ntBASIC8.31□□□□□ -1.08
USH2AO75445 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC8.31□□□□□ -1.08
USH2AO75445 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 AP001271.2-201ENST00000624018 1556 ntBASIC8.31□□□□□ -1.08
USH2AO75445 PCDHAC2-203ENST00000615316 3011 ntBASIC8.31□□□□□ -1.08
USH2AO75445 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 STOM-202ENST00000347359 870 ntTSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 IGHGP-201ENST00000390555 1178 ntBASIC8.31□□□□□ -1.08
USH2AO75445 PON3-203ENST00000427422 894 ntTSL 3 BASIC8.31□□□□□ -1.08
USH2AO75445 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 PNMT-203ENST00000581428 677 ntTSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
USH2AO75445 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC8.31□□□□□ -1.08
USH2AO75445 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC8.31□□□□□ -1.08
USH2AO75445 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC8.31□□□□□ -1.08
USH2AO75445 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
USH2AO75445 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC8.31□□□□□ -1.08
USH2AO75445 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
USH2AO75445 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
USH2AO75445 HEIH-201ENST00000623091 1652 ntBASIC8.3□□□□□ -1.08
USH2AO75445 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC8.3□□□□□ -1.08
USH2AO75445 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 UGT1A2P-201ENST00000454886 866 ntBASIC8.3□□□□□ -1.08
USH2AO75445 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC8.3□□□□□ -1.08
USH2AO75445 PDPK2P-202ENST00000562415 1191 ntBASIC8.3□□□□□ -1.08
USH2AO75445 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC8.3□□□□□ -1.08
USH2AO75445 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC8.3□□□□□ -1.08
USH2AO75445 CYGB-205ENST00000590175 830 ntTSL 3 BASIC8.3□□□□□ -1.08
USH2AO75445 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC8.3□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms