Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 TPM1-226ENST00000560959 925 ntTSL 2 BASIC23.49■■□□□ 1.35
CACNA1FO60840 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC23.49■■□□□ 1.35
CACNA1FO60840 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC23.49■■□□□ 1.35
CACNA1FO60840 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC23.49■■□□□ 1.35
CACNA1FO60840 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC23.49■■□□□ 1.35
CACNA1FO60840 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 AL163051.1-201ENST00000569214 1512 ntBASIC23.49■■□□□ 1.35
CACNA1FO60840 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC23.49■■□□□ 1.35
CACNA1FO60840 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 SNCG-201ENST00000348795 684 ntTSL 2 BASIC23.49■■□□□ 1.35
CACNA1FO60840 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1FO60840 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
CACNA1FO60840 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CACNA1FO60840 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
CACNA1FO60840 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC23.48■■□□□ 1.35
CACNA1FO60840 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CACNA1FO60840 HES2-202ENST00000377836 507 ntTSL 2 BASIC23.48■■□□□ 1.35
CACNA1FO60840 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CACNA1FO60840 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CACNA1FO60840 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CACNA1FO60840 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC23.48■■□□□ 1.35
CACNA1FO60840 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CACNA1FO60840 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CACNA1FO60840 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CACNA1FO60840 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC23.48■■□□□ 1.35
CACNA1FO60840 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC23.48■■□□□ 1.35
CACNA1FO60840 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CACNA1FO60840 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CACNA1FO60840 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CACNA1FO60840 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC23.48■■□□□ 1.35
CACNA1FO60840 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC23.48■■□□□ 1.35
CACNA1FO60840 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
CACNA1FO60840 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CACNA1FO60840 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC23.47■■□□□ 1.35
CACNA1FO60840 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC23.47■■□□□ 1.35
CACNA1FO60840 NDUFV2-AS1-203ENST00000608008 779 ntBASIC23.47■■□□□ 1.35
CACNA1FO60840 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC23.47■■□□□ 1.35
CACNA1FO60840 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
CACNA1FO60840 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
CACNA1FO60840 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CACNA1FO60840 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
CACNA1FO60840 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CACNA1FO60840 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CACNA1FO60840 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
CACNA1FO60840 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC23.47■■□□□ 1.35
CACNA1FO60840 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC23.47■■□□□ 1.35
CACNA1FO60840 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC23.47■■□□□ 1.35
CACNA1FO60840 AC073592.3-201ENST00000625118 1834 ntBASIC23.47■■□□□ 1.35
CACNA1FO60840 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC23.47■■□□□ 1.35
CACNA1FO60840 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC23.46■■□□□ 1.35
CACNA1FO60840 PCED1CP-201ENST00000419887 785 ntBASIC23.46■■□□□ 1.35
CACNA1FO60840 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC23.46■■□□□ 1.35
CACNA1FO60840 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC23.46■■□□□ 1.35
CACNA1FO60840 AL590326.2-201ENST00000625139 305 ntBASIC23.46■■□□□ 1.35
CACNA1FO60840 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC23.46■■□□□ 1.35
CACNA1FO60840 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CACNA1FO60840 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CACNA1FO60840 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CACNA1FO60840 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CACNA1FO60840 AP000974.1-201ENST00000623909 2387 ntBASIC23.46■■□□□ 1.35
CACNA1FO60840 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CACNA1FO60840 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
CACNA1FO60840 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
CACNA1FO60840 ISCU-203ENST00000431221 799 ntTSL 2 BASIC23.45■■□□□ 1.35
CACNA1FO60840 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
CACNA1FO60840 AL136038.3-201ENST00000561909 1096 ntBASIC23.45■■□□□ 1.35
CACNA1FO60840 AC087388.1-201ENST00000571370 1112 ntBASIC23.45■■□□□ 1.35
CACNA1FO60840 LITAF-220ENST00000620789 692 ntTSL 5 BASIC23.45■■□□□ 1.35
CACNA1FO60840 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
CACNA1FO60840 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CACNA1FO60840 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC23.45■■□□□ 1.34
CACNA1FO60840 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
CACNA1FO60840 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CACNA1FO60840 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.34
CACNA1FO60840 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
CACNA1FO60840 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC23.45■■□□□ 1.34
CACNA1FO60840 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CACNA1FO60840 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CACNA1FO60840 COPE-203ENST00000351079 907 ntTSL 2 BASIC23.45■■□□□ 1.34
CACNA1FO60840 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC23.45■■□□□ 1.34
CACNA1FO60840 AC024563.2-201ENST00000603282 481 ntBASIC23.45■■□□□ 1.34
CACNA1FO60840 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC23.45■■□□□ 1.34
CACNA1FO60840 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC23.45■■□□□ 1.34
CACNA1FO60840 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC23.45■■□□□ 1.34
CACNA1FO60840 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CACNA1FO60840 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CACNA1FO60840 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
CACNA1FO60840 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CACNA1FO60840 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CACNA1FO60840 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC23.44■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms