Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SNX3O60493 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SNX3O60493 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SNX3O60493 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX3O60493 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.41■□□□□ 0.54
SNX3O60493 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.41■□□□□ 0.54
SNX3O60493 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.41■□□□□ 0.54
SNX3O60493 AC008556.1-201ENST00000610908 2040 ntBASIC18.41■□□□□ 0.54
SNX3O60493 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SNX3O60493 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SNX3O60493 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX3O60493 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SNX3O60493 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
SNX3O60493 CNN2P6-201ENST00000439038 900 ntBASIC18.41■□□□□ 0.54
SNX3O60493 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SNX3O60493 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX3O60493 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX3O60493 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX3O60493 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
SNX3O60493 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX3O60493 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX3O60493 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SNX3O60493 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SNX3O60493 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.41■□□□□ 0.54
SNX3O60493 AC008406.3-201ENST00000620001 1374 ntBASIC18.41■□□□□ 0.54
SNX3O60493 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.4■□□□□ 0.54
SNX3O60493 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SNX3O60493 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.4■□□□□ 0.54
SNX3O60493 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.4■□□□□ 0.54
SNX3O60493 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 AL139384.1-201ENST00000612143 3047 ntBASIC18.4■□□□□ 0.54
SNX3O60493 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.4■□□□□ 0.54
SNX3O60493 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.4■□□□□ 0.54
SNX3O60493 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
SNX3O60493 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.4■□□□□ 0.54
SNX3O60493 AC073210.2-201ENST00000430369 194 ntBASIC18.4■□□□□ 0.54
SNX3O60493 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
SNX3O60493 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.4■□□□□ 0.54
SNX3O60493 BID-214ENST00000617586 542 ntTSL 5 BASIC18.4■□□□□ 0.54
SNX3O60493 AC068587.9-201ENST00000641814 219 ntBASIC18.4■□□□□ 0.54
SNX3O60493 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.4■□□□□ 0.54
SNX3O60493 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SNX3O60493 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SNX3O60493 AC112777.1-201ENST00000540175 1423 ntBASIC18.4■□□□□ 0.54
SNX3O60493 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
SNX3O60493 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.4■□□□□ 0.54
SNX3O60493 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SNX3O60493 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
SNX3O60493 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SNX3O60493 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.39■□□□□ 0.53
SNX3O60493 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SNX3O60493 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SNX3O60493 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX3O60493 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX3O60493 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SNX3O60493 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.39■□□□□ 0.53
SNX3O60493 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SNX3O60493 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SNX3O60493 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX3O60493 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX3O60493 TSPY23P-201ENST00000440136 739 ntBASIC18.39■□□□□ 0.53
SNX3O60493 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX3O60493 AC142381.2-201ENST00000566120 298 ntBASIC18.39■□□□□ 0.53
SNX3O60493 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX3O60493 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX3O60493 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SNX3O60493 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
SNX3O60493 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SNX3O60493 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SNX3O60493 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.39■□□□□ 0.53
SNX3O60493 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.39■□□□□ 0.53
SNX3O60493 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.38■□□□□ 0.53
SNX3O60493 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.38■□□□□ 0.53
SNX3O60493 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.38■□□□□ 0.53
SNX3O60493 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 AP001094.4-201ENST00000579008 2176 ntBASIC18.38■□□□□ 0.53
SNX3O60493 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
SNX3O60493 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SNX3O60493 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.38■□□□□ 0.53
SNX3O60493 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
SNX3O60493 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.38■□□□□ 0.53
SNX3O60493 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.38■□□□□ 0.53
SNX3O60493 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms