Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CACNA1AO00555 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CACNA1AO00555 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CACNA1AO00555 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CACNA1AO00555 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.54■□□□□ 0.4
CACNA1AO00555 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CACNA1AO00555 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CACNA1AO00555 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.54■□□□□ 0.4
CACNA1AO00555 PDPK2P-202ENST00000562415 1191 ntBASIC17.54■□□□□ 0.4
CACNA1AO00555 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.54■□□□□ 0.4
CACNA1AO00555 AC015911.4-201ENST00000588022 1070 ntBASIC17.54■□□□□ 0.4
CACNA1AO00555 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.54■□□□□ 0.4
CACNA1AO00555 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.54■□□□□ 0.4
CACNA1AO00555 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CACNA1AO00555 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CACNA1AO00555 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.54■□□□□ 0.4
CACNA1AO00555 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CACNA1AO00555 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.54■□□□□ 0.4
CACNA1AO00555 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CACNA1AO00555 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CACNA1AO00555 ARSEP1-201ENST00000420443 635 ntBASIC17.54■□□□□ 0.4
CACNA1AO00555 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CACNA1AO00555 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.54■□□□□ 0.4
CACNA1AO00555 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.54■□□□□ 0.4
CACNA1AO00555 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.54■□□□□ 0.4
CACNA1AO00555 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
CACNA1AO00555 AC092902.6-201ENST00000641783 218 ntBASIC17.54■□□□□ 0.4
CACNA1AO00555 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
CACNA1AO00555 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CACNA1AO00555 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.54■□□□□ 0.4
CACNA1AO00555 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CACNA1AO00555 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.54■□□□□ 0.4
CACNA1AO00555 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.53■□□□□ 0.4
CACNA1AO00555 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.53■□□□□ 0.4
CACNA1AO00555 AC008687.5-201ENST00000593746 558 ntBASIC17.53■□□□□ 0.4
CACNA1AO00555 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CACNA1AO00555 AL390955.2-201ENST00000603032 514 ntBASIC17.53■□□□□ 0.4
CACNA1AO00555 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.53■□□□□ 0.4
CACNA1AO00555 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CACNA1AO00555 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17.53■□□□□ 0.4
CACNA1AO00555 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CACNA1AO00555 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 AC236430.1-201ENST00000402231 743 ntBASIC17.53■□□□□ 0.4
CACNA1AO00555 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.53■□□□□ 0.4
CACNA1AO00555 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.53■□□□□ 0.4
CACNA1AO00555 AC109322.1-201ENST00000524499 1264 ntBASIC17.53■□□□□ 0.4
CACNA1AO00555 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.53■□□□□ 0.4
CACNA1AO00555 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.53■□□□□ 0.4
CACNA1AO00555 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CACNA1AO00555 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CACNA1AO00555 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CACNA1AO00555 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CACNA1AO00555 AP001271.2-201ENST00000624018 1556 ntBASIC17.52■□□□□ 0.4
CACNA1AO00555 AC121338.2-201ENST00000622535 1744 ntBASIC17.52■□□□□ 0.4
CACNA1AO00555 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CACNA1AO00555 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CACNA1AO00555 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.52■□□□□ 0.4
CACNA1AO00555 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CACNA1AO00555 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.52■□□□□ 0.4
CACNA1AO00555 CRB3P1-201ENST00000449338 276 ntBASIC17.52■□□□□ 0.4
CACNA1AO00555 AL031432.2-201ENST00000566714 459 ntBASIC17.52■□□□□ 0.4
CACNA1AO00555 AL928711.1-201ENST00000570165 459 ntBASIC17.52■□□□□ 0.4
CACNA1AO00555 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CACNA1AO00555 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.52■□□□□ 0.4
CACNA1AO00555 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.52■□□□□ 0.4
CACNA1AO00555 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CACNA1AO00555 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.52■□□□□ 0.4
CACNA1AO00555 AC073592.5-201ENST00000624854 528 ntBASIC17.52■□□□□ 0.4
CACNA1AO00555 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.52■□□□□ 0.4
CACNA1AO00555 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC17.52■□□□□ 0.4
CACNA1AO00555 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CACNA1AO00555 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.52■□□□□ 0.4
CACNA1AO00555 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
CACNA1AO00555 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.52■□□□□ 0.39
CACNA1AO00555 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CACNA1AO00555 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CACNA1AO00555 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CACNA1AO00555 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
CACNA1AO00555 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.52■□□□□ 0.39
CACNA1AO00555 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC17.52■□□□□ 0.39
CACNA1AO00555 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.52■□□□□ 0.39
CACNA1AO00555 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CACNA1AO00555 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.52■□□□□ 0.39
CACNA1AO00555 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.51■□□□□ 0.39
CACNA1AO00555 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.51■□□□□ 0.39
CACNA1AO00555 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CACNA1AO00555 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms