Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 SPEG-225ENST00000617028 815 ntTSL 5 BASIC21.15■□□□□ 0.98
COL20A1Q9P218 BCL10-202ENST00000620248 774 ntTSL 5 BASIC21.15■□□□□ 0.98
COL20A1Q9P218 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.15■□□□□ 0.98
COL20A1Q9P218 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL20A1Q9P218 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.15■□□□□ 0.98
COL20A1Q9P218 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL20A1Q9P218 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL20A1Q9P218 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL20A1Q9P218 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
COL20A1Q9P218 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
COL20A1Q9P218 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL20A1Q9P218 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL20A1Q9P218 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL20A1Q9P218 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL20A1Q9P218 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
COL20A1Q9P218 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL20A1Q9P218 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL20A1Q9P218 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
COL20A1Q9P218 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL20A1Q9P218 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL20A1Q9P218 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
COL20A1Q9P218 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21.14■□□□□ 0.97
COL20A1Q9P218 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.14■□□□□ 0.97
COL20A1Q9P218 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL20A1Q9P218 AC083906.6-201ENST00000641366 219 ntBASIC21.14■□□□□ 0.97
COL20A1Q9P218 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL20A1Q9P218 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL20A1Q9P218 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
COL20A1Q9P218 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL20A1Q9P218 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.14■□□□□ 0.97
COL20A1Q9P218 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.14■□□□□ 0.97
COL20A1Q9P218 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL20A1Q9P218 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
COL20A1Q9P218 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL20A1Q9P218 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL20A1Q9P218 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL20A1Q9P218 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL20A1Q9P218 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL20A1Q9P218 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL20A1Q9P218 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL20A1Q9P218 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 DUSP5P1-201ENST00000441325 1139 ntBASIC21.13■□□□□ 0.97
COL20A1Q9P218 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL20A1Q9P218 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL20A1Q9P218 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL20A1Q9P218 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL20A1Q9P218 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL20A1Q9P218 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.13■□□□□ 0.97
COL20A1Q9P218 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 AP002383.4-201ENST00000442518 975 ntBASIC21.12■□□□□ 0.97
COL20A1Q9P218 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 AC092119.3-201ENST00000612618 583 ntBASIC21.12■□□□□ 0.97
COL20A1Q9P218 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC21.12■□□□□ 0.97
COL20A1Q9P218 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL20A1Q9P218 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.12■□□□□ 0.97
COL20A1Q9P218 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.11■□□□□ 0.97
COL20A1Q9P218 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 AC093525.10-201ENST00000625130 1569 ntBASIC21.11■□□□□ 0.97
COL20A1Q9P218 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL20A1Q9P218 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms