Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.42■□□□□ 0.22
LIME1Q9H400 SPDYE15P-201ENST00000424157 909 ntBASIC16.42■□□□□ 0.22
LIME1Q9H400 PVRIG2P-201ENST00000435460 978 ntBASIC16.42■□□□□ 0.22
LIME1Q9H400 SPDYE13P-201ENST00000445314 798 ntBASIC16.42■□□□□ 0.22
LIME1Q9H400 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.42■□□□□ 0.22
LIME1Q9H400 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.42■□□□□ 0.22
LIME1Q9H400 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.42■□□□□ 0.22
LIME1Q9H400 RN7SL510P-201ENST00000581311 263 ntBASIC16.42■□□□□ 0.22
LIME1Q9H400 NPAP1P7-201ENST00000613027 823 ntBASIC16.42■□□□□ 0.22
LIME1Q9H400 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.42■□□□□ 0.22
LIME1Q9H400 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
LIME1Q9H400 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
LIME1Q9H400 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.42■□□□□ 0.22
LIME1Q9H400 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIME1Q9H400 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LIME1Q9H400 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.41■□□□□ 0.22
LIME1Q9H400 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.41■□□□□ 0.22
LIME1Q9H400 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.41■□□□□ 0.22
LIME1Q9H400 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIME1Q9H400 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIME1Q9H400 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIME1Q9H400 STARP1-201ENST00000397973 869 ntBASIC16.41■□□□□ 0.22
LIME1Q9H400 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIME1Q9H400 AL845331.1-201ENST00000424978 1190 ntBASIC16.41■□□□□ 0.22
LIME1Q9H400 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC16.41■□□□□ 0.22
LIME1Q9H400 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.41■□□□□ 0.22
LIME1Q9H400 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.41■□□□□ 0.22
LIME1Q9H400 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.41■□□□□ 0.22
LIME1Q9H400 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.41■□□□□ 0.22
LIME1Q9H400 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
LIME1Q9H400 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.41■□□□□ 0.22
LIME1Q9H400 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC16.41■□□□□ 0.22
LIME1Q9H400 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC16.41■□□□□ 0.22
LIME1Q9H400 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIME1Q9H400 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIME1Q9H400 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
LIME1Q9H400 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC16.41■□□□□ 0.22
LIME1Q9H400 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.41■□□□□ 0.22
LIME1Q9H400 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIME1Q9H400 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIME1Q9H400 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIME1Q9H400 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LIME1Q9H400 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
LIME1Q9H400 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.4■□□□□ 0.22
LIME1Q9H400 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.4■□□□□ 0.22
LIME1Q9H400 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 FDX1P1-201ENST00000449115 551 ntBASIC16.4■□□□□ 0.22
LIME1Q9H400 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.4■□□□□ 0.22
LIME1Q9H400 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.4■□□□□ 0.22
LIME1Q9H400 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.4■□□□□ 0.22
LIME1Q9H400 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.4■□□□□ 0.22
LIME1Q9H400 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.4■□□□□ 0.22
LIME1Q9H400 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIME1Q9H400 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
LIME1Q9H400 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.22
LIME1Q9H400 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
LIME1Q9H400 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
LIME1Q9H400 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.39■□□□□ 0.21
LIME1Q9H400 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.39■□□□□ 0.21
LIME1Q9H400 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LIME1Q9H400 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.39■□□□□ 0.21
LIME1Q9H400 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.39■□□□□ 0.21
LIME1Q9H400 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.39■□□□□ 0.21
LIME1Q9H400 PRELID1P1-202ENST00000567272 903 ntBASIC16.39■□□□□ 0.21
LIME1Q9H400 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms