Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
NKX3-1Q99801 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
NKX3-1Q99801 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.33■□□□□ 0.21
NKX3-1Q99801 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.33■□□□□ 0.21
NKX3-1Q99801 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 TSPY23P-201ENST00000440136 739 ntBASIC16.33■□□□□ 0.2
NKX3-1Q99801 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 INO80E-214ENST00000620599 515 ntTSL 2 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
NKX3-1Q99801 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
NKX3-1Q99801 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 KRT18P29-201ENST00000397031 1267 ntBASIC16.32■□□□□ 0.2
NKX3-1Q99801 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.32■□□□□ 0.2
NKX3-1Q99801 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 POU5F1P3-201ENST00000428824 1078 ntBASIC16.32■□□□□ 0.2
NKX3-1Q99801 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 HLA-A-209ENST00000638375 975 ntBASIC16.32■□□□□ 0.2
NKX3-1Q99801 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.32■□□□□ 0.2
NKX3-1Q99801 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
NKX3-1Q99801 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
NKX3-1Q99801 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
NKX3-1Q99801 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NKX3-1Q99801 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.31■□□□□ 0.2
NKX3-1Q99801 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.31■□□□□ 0.2
NKX3-1Q99801 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
NKX3-1Q99801 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.31■□□□□ 0.2
NKX3-1Q99801 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC16.31■□□□□ 0.2
NKX3-1Q99801 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC16.31■□□□□ 0.2
NKX3-1Q99801 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NKX3-1Q99801 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms