Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC30.98■■■□□ 2.55
IFT140Q96RY7 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
IFT140Q96RY7 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
IFT140Q96RY7 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC30.97■■■□□ 2.55
IFT140Q96RY7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
IFT140Q96RY7 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
IFT140Q96RY7 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC30.97■■■□□ 2.55
IFT140Q96RY7 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC30.97■■■□□ 2.55
IFT140Q96RY7 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
IFT140Q96RY7 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC30.97■■■□□ 2.55
IFT140Q96RY7 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC30.97■■■□□ 2.55
IFT140Q96RY7 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC30.97■■■□□ 2.55
IFT140Q96RY7 KRT8P32-201ENST00000512863 1461 ntBASIC30.97■■■□□ 2.55
IFT140Q96RY7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
IFT140Q96RY7 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
IFT140Q96RY7 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
IFT140Q96RY7 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
IFT140Q96RY7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
IFT140Q96RY7 INTS4P1-201ENST00000438455 1935 ntBASIC30.97■■■□□ 2.55
IFT140Q96RY7 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC30.97■■■□□ 2.55
IFT140Q96RY7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC30.96■■■□□ 2.55
IFT140Q96RY7 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
IFT140Q96RY7 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC30.96■■■□□ 2.55
IFT140Q96RY7 RBSN-204ENST00000449050 903 ntTSL 2 BASIC30.96■■■□□ 2.55
IFT140Q96RY7 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC30.96■■■□□ 2.55
IFT140Q96RY7 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC30.96■■■□□ 2.55
IFT140Q96RY7 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC30.96■■■□□ 2.55
IFT140Q96RY7 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC30.96■■■□□ 2.55
IFT140Q96RY7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC30.96■■■□□ 2.55
IFT140Q96RY7 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
IFT140Q96RY7 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC30.96■■■□□ 2.55
IFT140Q96RY7 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
IFT140Q96RY7 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
IFT140Q96RY7 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC30.96■■■□□ 2.55
IFT140Q96RY7 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
IFT140Q96RY7 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
IFT140Q96RY7 RNA5SP416-201ENST00000516838 111 ntBASIC30.95■■■□□ 2.55
IFT140Q96RY7 OR7E14P-202ENST00000530490 1290 ntBASIC30.95■■■□□ 2.55
IFT140Q96RY7 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC30.95■■■□□ 2.55
IFT140Q96RY7 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.55
IFT140Q96RY7 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
IFT140Q96RY7 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
IFT140Q96RY7 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
IFT140Q96RY7 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
IFT140Q96RY7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC30.95■■■□□ 2.54
IFT140Q96RY7 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
IFT140Q96RY7 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
IFT140Q96RY7 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC30.95■■■□□ 2.54
IFT140Q96RY7 MEG3-211ENST00000452514 461 ntTSL 3 BASIC30.95■■■□□ 2.54
IFT140Q96RY7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC30.95■■■□□ 2.54
IFT140Q96RY7 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC30.94■■■□□ 2.54
IFT140Q96RY7 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC30.94■■■□□ 2.54
IFT140Q96RY7 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
IFT140Q96RY7 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC30.94■■■□□ 2.54
IFT140Q96RY7 AL512408.1-201ENST00000569378 2000 ntBASIC30.94■■■□□ 2.54
IFT140Q96RY7 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC30.94■■■□□ 2.54
IFT140Q96RY7 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
IFT140Q96RY7 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
IFT140Q96RY7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
IFT140Q96RY7 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
IFT140Q96RY7 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
IFT140Q96RY7 KIRREL3-AS3-201ENST00000404882 831 ntBASIC30.94■■■□□ 2.54
IFT140Q96RY7 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC30.94■■■□□ 2.54
IFT140Q96RY7 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
IFT140Q96RY7 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC30.93■■■□□ 2.54
IFT140Q96RY7 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
IFT140Q96RY7 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC30.93■■■□□ 2.54
IFT140Q96RY7 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
IFT140Q96RY7 AP005117.1-201ENST00000584346 1413 ntBASIC30.93■■■□□ 2.54
IFT140Q96RY7 AC026310.3-201ENST00000625186 2373 ntBASIC30.93■■■□□ 2.54
IFT140Q96RY7 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
IFT140Q96RY7 RAB17-203ENST00000409576 466 ntTSL 3 BASIC30.93■■■□□ 2.54
IFT140Q96RY7 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC30.93■■■□□ 2.54
IFT140Q96RY7 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
IFT140Q96RY7 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC30.93■■■□□ 2.54
IFT140Q96RY7 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC30.92■■■□□ 2.54
IFT140Q96RY7 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
IFT140Q96RY7 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
IFT140Q96RY7 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
IFT140Q96RY7 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
IFT140Q96RY7 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC30.92■■■□□ 2.54
IFT140Q96RY7 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC30.92■■■□□ 2.54
IFT140Q96RY7 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC30.92■■■□□ 2.54
IFT140Q96RY7 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
IFT140Q96RY7 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
IFT140Q96RY7 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
IFT140Q96RY7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
IFT140Q96RY7 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC30.91■■■□□ 2.54
IFT140Q96RY7 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC30.91■■■□□ 2.54
IFT140Q96RY7 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC30.91■■■□□ 2.54
IFT140Q96RY7 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC30.91■■■□□ 2.54
IFT140Q96RY7 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC30.91■■■□□ 2.54
IFT140Q96RY7 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
IFT140Q96RY7 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC30.91■■■□□ 2.54
IFT140Q96RY7 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC30.91■■■□□ 2.54
IFT140Q96RY7 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
IFT140Q96RY7 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC30.9■■■□□ 2.54
IFT140Q96RY7 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC30.9■■■□□ 2.54
IFT140Q96RY7 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC30.9■■■□□ 2.54
IFT140Q96RY7 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms