Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.48■□□□□ 0.55
VPS13AQ96RL7 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 MCCD1P1-208ENST00000445732 328 ntBASIC18.48■□□□□ 0.55
VPS13AQ96RL7 AC132008.2-207ENST00000454517 770 ntBASIC18.48■□□□□ 0.55
VPS13AQ96RL7 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 AC244107.1-201ENST00000442033 332 ntBASIC18.48■□□□□ 0.55
VPS13AQ96RL7 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 AP001269.4-201ENST00000609611 512 ntBASIC18.48■□□□□ 0.55
VPS13AQ96RL7 AC083906.6-201ENST00000641366 219 ntBASIC18.48■□□□□ 0.55
VPS13AQ96RL7 AC079781.4-201ENST00000641908 219 ntBASIC18.48■□□□□ 0.55
VPS13AQ96RL7 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS13AQ96RL7 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 AC010240.3-201ENST00000607688 395 ntBASIC18.47■□□□□ 0.55
VPS13AQ96RL7 AL355877.3-201ENST00000622820 899 ntBASIC18.47■□□□□ 0.55
VPS13AQ96RL7 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 AC239800.4-201ENST00000603712 296 ntBASIC18.47■□□□□ 0.55
VPS13AQ96RL7 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13AQ96RL7 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 AC005336.2-201ENST00000593183 939 ntBASIC18.46■□□□□ 0.55
VPS13AQ96RL7 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 GPR32P1-201ENST00000601788 811 ntBASIC18.46■□□□□ 0.55
VPS13AQ96RL7 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 MIR5100-201ENST00000579544 119 ntBASIC18.46■□□□□ 0.55
VPS13AQ96RL7 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13AQ96RL7 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
VPS13AQ96RL7 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
VPS13AQ96RL7 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 KRT18P3-201ENST00000451602 1288 ntBASIC18.45■□□□□ 0.54
VPS13AQ96RL7 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.45■□□□□ 0.54
VPS13AQ96RL7 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms