Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 DRAXINP1-201ENST00000437611 948 ntBASIC18.75■□□□□ 0.59
HMGB4Q8WW32 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 FDX1P1-201ENST00000449115 551 ntBASIC18.75■□□□□ 0.59
HMGB4Q8WW32 TOB2P1-201ENST00000469761 992 ntBASIC18.75■□□□□ 0.59
HMGB4Q8WW32 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 TREX1-205ENST00000625293 1783 ntBASIC18.75■□□□□ 0.59
HMGB4Q8WW32 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HMGB4Q8WW32 KRT8P10-201ENST00000450021 1447 ntBASIC18.74■□□□□ 0.59
HMGB4Q8WW32 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 HOXB1-202ENST00000577092 1414 ntBASIC18.74■□□□□ 0.59
HMGB4Q8WW32 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.74■□□□□ 0.59
HMGB4Q8WW32 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 EMBP1-201ENST00000458200 901 ntBASIC18.73■□□□□ 0.59
HMGB4Q8WW32 AP003733.1-201ENST00000491725 852 ntBASIC18.73■□□□□ 0.59
HMGB4Q8WW32 FOSL1P1-201ENST00000511041 816 ntBASIC18.73■□□□□ 0.59
HMGB4Q8WW32 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 AC091304.2-201ENST00000564639 760 ntBASIC18.73■□□□□ 0.59
HMGB4Q8WW32 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HMGB4Q8WW32 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 MIR564-202ENST00000385049 94 ntBASIC18.72■□□□□ 0.59
HMGB4Q8WW32 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.72■□□□□ 0.59
HMGB4Q8WW32 KRT17P6-201ENST00000453795 1220 ntBASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms