Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 MST1L-201ENST00000442552 2185 ntBASIC16.74■□□□□ 0.27
CCDC58Q4VC31 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 AC067852.2-201ENST00000590513 2313 ntBASIC16.73■□□□□ 0.27
CCDC58Q4VC31 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC58Q4VC31 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 AC004911.1-201ENST00000416316 871 ntBASIC16.72■□□□□ 0.27
CCDC58Q4VC31 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC58Q4VC31 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 ABHD17AP6-201ENST00000458502 1044 ntBASIC16.71■□□□□ 0.27
CCDC58Q4VC31 OR2A1-AS1-201ENST00000462305 773 ntBASIC16.71■□□□□ 0.27
CCDC58Q4VC31 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 AL121829.2-201ENST00000620908 328 ntBASIC16.71■□□□□ 0.27
CCDC58Q4VC31 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC58Q4VC31 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms