Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC15.1■□□□□ 0.01
CX3CL1P78423 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
CX3CL1P78423 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC15.1■□□□□ 0.01
CX3CL1P78423 AP003071.4-201ENST00000562276 1284 ntBASIC15.1■□□□□ 0.01
CX3CL1P78423 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC15.1■□□□□ 0.01
CX3CL1P78423 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CX3CL1P78423 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CX3CL1P78423 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC15.1■□□□□ 0.01
CX3CL1P78423 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC15.1■□□□□ 0.01
CX3CL1P78423 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
CX3CL1P78423 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CX3CL1P78423 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CX3CL1P78423 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
CX3CL1P78423 TSPY7P-201ENST00000431358 1114 ntBASIC15.09■□□□□ 0.01
CX3CL1P78423 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 SNORA78-201ENST00000459373 127 ntBASIC15.09■□□□□ 0.01
CX3CL1P78423 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC15.09■□□□□ 0.01
CX3CL1P78423 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
CX3CL1P78423 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC15.09■□□□□ 0.01
CX3CL1P78423 MIR4785-201ENST00000585005 73 ntBASIC15.09■□□□□ 0.01
CX3CL1P78423 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 AP000692.2-201ENST00000608391 879 ntBASIC15.09■□□□□ 0.01
CX3CL1P78423 REXO1L10P-201ENST00000615707 1290 ntBASIC15.09■□□□□ 0.01
CX3CL1P78423 REXO1L12P-201ENST00000622156 912 ntBASIC15.09■□□□□ 0.01
CX3CL1P78423 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC15.09■□□□□ 0.01
CX3CL1P78423 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC15.09■□□□□ 0.01
CX3CL1P78423 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CX3CL1P78423 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.09■□□□□ 0.01
CX3CL1P78423 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CX3CL1P78423 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CX3CL1P78423 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC15.08■□□□□ 0.01
CX3CL1P78423 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
CX3CL1P78423 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC15.08■□□□□ 0.01
CX3CL1P78423 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
CX3CL1P78423 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CX3CL1P78423 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.08■□□□□ 0
CX3CL1P78423 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
CX3CL1P78423 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
CX3CL1P78423 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC15.08■□□□□ 0
CX3CL1P78423 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
CX3CL1P78423 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC15.08■□□□□ 0
CX3CL1P78423 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC15.08■□□□□ 0
CX3CL1P78423 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC15.08■□□□□ 0
CX3CL1P78423 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC15.08■□□□□ 0
CX3CL1P78423 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC15.08■□□□□ 0
CX3CL1P78423 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC15.08■□□□□ 0
CX3CL1P78423 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC15.08■□□□□ 0
CX3CL1P78423 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
CX3CL1P78423 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms