Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.1■□□□□ 0.17
ABCA4P78363 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ABCA4P78363 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.09■□□□□ 0.17
ABCA4P78363 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
ABCA4P78363 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC16.09■□□□□ 0.17
ABCA4P78363 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 NUS1P1-201ENST00000446295 882 ntBASIC16.09■□□□□ 0.17
ABCA4P78363 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.09■□□□□ 0.17
ABCA4P78363 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.09■□□□□ 0.17
ABCA4P78363 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.09■□□□□ 0.17
ABCA4P78363 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.09■□□□□ 0.17
ABCA4P78363 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.09■□□□□ 0.17
ABCA4P78363 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.09■□□□□ 0.17
ABCA4P78363 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.09■□□□□ 0.17
ABCA4P78363 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.09■□□□□ 0.17
ABCA4P78363 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC16.09■□□□□ 0.17
ABCA4P78363 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
ABCA4P78363 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
ABCA4P78363 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC16.09■□□□□ 0.17
ABCA4P78363 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
ABCA4P78363 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA4P78363 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.08■□□□□ 0.17
ABCA4P78363 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
ABCA4P78363 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA4P78363 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.17
ABCA4P78363 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA4P78363 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA4P78363 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.08■□□□□ 0.17
ABCA4P78363 AC079781.3-201ENST00000449110 356 ntBASIC16.08■□□□□ 0.17
ABCA4P78363 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.08■□□□□ 0.17
ABCA4P78363 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA4P78363 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
ABCA4P78363 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.08■□□□□ 0.17
ABCA4P78363 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.17
ABCA4P78363 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.08■□□□□ 0.17
ABCA4P78363 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
ABCA4P78363 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA4P78363 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.08■□□□□ 0.17
ABCA4P78363 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA4P78363 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA4P78363 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA4P78363 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
ABCA4P78363 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
ABCA4P78363 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ABCA4P78363 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ABCA4P78363 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ABCA4P78363 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.08■□□□□ 0.16
ABCA4P78363 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ABCA4P78363 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ABCA4P78363 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ABCA4P78363 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.08■□□□□ 0.16
ABCA4P78363 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.08■□□□□ 0.16
ABCA4P78363 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.08■□□□□ 0.16
ABCA4P78363 TOB2P1-201ENST00000469761 992 ntBASIC16.08■□□□□ 0.16
ABCA4P78363 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.08■□□□□ 0.16
ABCA4P78363 KRT8P26-201ENST00000534154 1276 ntBASIC16.08■□□□□ 0.16
ABCA4P78363 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.08■□□□□ 0.16
ABCA4P78363 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
ABCA4P78363 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
ABCA4P78363 HTR7P1-202ENST00000624664 4411 ntBASIC16.08■□□□□ 0.16
ABCA4P78363 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC16.08■□□□□ 0.16
ABCA4P78363 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ABCA4P78363 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.08■□□□□ 0.16
ABCA4P78363 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
ABCA4P78363 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
ABCA4P78363 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.08■□□□□ 0.16
ABCA4P78363 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC16.07■□□□□ 0.16
ABCA4P78363 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.07■□□□□ 0.16
ABCA4P78363 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.07■□□□□ 0.16
ABCA4P78363 AC106795.1-205ENST00000512851 1056 ntBASIC16.07■□□□□ 0.16
ABCA4P78363 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
ABCA4P78363 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
ABCA4P78363 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.07■□□□□ 0.16
ABCA4P78363 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.07■□□□□ 0.16
ABCA4P78363 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
ABCA4P78363 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ABCA4P78363 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms