Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 BMP1-204ENST00000397814 836 ntTSL 4 BASIC14.07□□□□□ -0.16
FOXA3P55318 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXA3P55318 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXA3P55318 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
FOXA3P55318 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXA3P55318 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXA3P55318 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC14.06□□□□□ -0.16
FOXA3P55318 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC14.06□□□□□ -0.16
FOXA3P55318 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC14.06□□□□□ -0.16
FOXA3P55318 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
FOXA3P55318 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC14.06□□□□□ -0.16
FOXA3P55318 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
FOXA3P55318 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 AK1-201ENST00000223836 736 ntTSL 3 BASIC14.06□□□□□ -0.16
FOXA3P55318 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 PARP1-202ENST00000366792 553 ntTSL 3 BASIC14.06□□□□□ -0.16
FOXA3P55318 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
FOXA3P55318 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC14.06□□□□□ -0.16
FOXA3P55318 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC14.06□□□□□ -0.16
FOXA3P55318 AC013268.1-206ENST00000638368 961 ntBASIC14.06□□□□□ -0.16
FOXA3P55318 AC112229.1-201ENST00000639295 961 ntBASIC14.06□□□□□ -0.16
FOXA3P55318 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
FOXA3P55318 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA3P55318 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC14.05□□□□□ -0.16
FOXA3P55318 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
FOXA3P55318 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
FOXA3P55318 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
FOXA3P55318 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC14.05□□□□□ -0.16
FOXA3P55318 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC14.05□□□□□ -0.16
FOXA3P55318 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
FOXA3P55318 AC134043.2-201ENST00000624206 2238 ntBASIC14.05□□□□□ -0.16
FOXA3P55318 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 NALT1-201ENST00000429224 738 ntTSL 5 BASIC14.05□□□□□ -0.16
FOXA3P55318 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC14.05□□□□□ -0.16
FOXA3P55318 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC14.05□□□□□ -0.16
FOXA3P55318 CYP2T3P-201ENST00000601990 817 ntBASIC14.05□□□□□ -0.16
FOXA3P55318 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC14.05□□□□□ -0.16
FOXA3P55318 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
FOXA3P55318 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC14.05□□□□□ -0.16
FOXA3P55318 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA3P55318 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
FOXA3P55318 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA3P55318 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms