Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC26.78■■□□□ 1.88
CLTCL1P53675 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
CLTCL1P53675 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
CLTCL1P53675 PPOX-214ENST00000535223 664 ntTSL 3 BASIC26.78■■□□□ 1.88
CLTCL1P53675 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC26.78■■□□□ 1.88
CLTCL1P53675 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC26.78■■□□□ 1.88
CLTCL1P53675 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CLTCL1P53675 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
CLTCL1P53675 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC26.78■■□□□ 1.88
CLTCL1P53675 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC26.78■■□□□ 1.88
CLTCL1P53675 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC26.78■■□□□ 1.88
CLTCL1P53675 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC26.78■■□□□ 1.88
CLTCL1P53675 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC26.77■■□□□ 1.88
CLTCL1P53675 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CLTCL1P53675 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC26.77■■□□□ 1.88
CLTCL1P53675 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC26.77■■□□□ 1.88
CLTCL1P53675 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CLTCL1P53675 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CLTCL1P53675 PCDHAC2-203ENST00000615316 3011 ntBASIC26.77■■□□□ 1.88
CLTCL1P53675 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CLTCL1P53675 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CLTCL1P53675 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
CLTCL1P53675 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CLTCL1P53675 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CLTCL1P53675 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CLTCL1P53675 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CLTCL1P53675 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CLTCL1P53675 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC26.77■■□□□ 1.88
CLTCL1P53675 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC26.76■■□□□ 1.88
CLTCL1P53675 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC26.76■■□□□ 1.88
CLTCL1P53675 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.88
CLTCL1P53675 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC26.76■■□□□ 1.87
CLTCL1P53675 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CLTCL1P53675 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CLTCL1P53675 IGHV3-47-201ENST00000425060 335 ntBASIC26.76■■□□□ 1.87
CLTCL1P53675 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC26.76■■□□□ 1.87
CLTCL1P53675 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC26.76■■□□□ 1.87
CLTCL1P53675 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC26.76■■□□□ 1.87
CLTCL1P53675 AC090616.6-201ENST00000582640 721 ntBASIC26.76■■□□□ 1.87
CLTCL1P53675 AC099336.1-202ENST00000602961 463 ntBASIC26.76■■□□□ 1.87
CLTCL1P53675 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CLTCL1P53675 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC26.76■■□□□ 1.87
CLTCL1P53675 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC26.76■■□□□ 1.87
CLTCL1P53675 AL032819.2-201ENST00000624543 2162 ntBASIC26.76■■□□□ 1.87
CLTCL1P53675 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CLTCL1P53675 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CLTCL1P53675 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC26.76■■□□□ 1.87
CLTCL1P53675 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CLTCL1P53675 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC26.76■■□□□ 1.87
CLTCL1P53675 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CLTCL1P53675 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CLTCL1P53675 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC26.76■■□□□ 1.87
CLTCL1P53675 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC26.76■■□□□ 1.87
CLTCL1P53675 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC26.76■■□□□ 1.87
CLTCL1P53675 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CLTCL1P53675 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CLTCL1P53675 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CLTCL1P53675 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CLTCL1P53675 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC26.75■■□□□ 1.87
CLTCL1P53675 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
CLTCL1P53675 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
CLTCL1P53675 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CLTCL1P53675 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CLTCL1P53675 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CLTCL1P53675 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CLTCL1P53675 REEP1-209ENST00000541910 969 ntTSL 2 BASIC26.75■■□□□ 1.87
CLTCL1P53675 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC26.75■■□□□ 1.87
CLTCL1P53675 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC26.75■■□□□ 1.87
CLTCL1P53675 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
CLTCL1P53675 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC26.75■■□□□ 1.87
CLTCL1P53675 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CLTCL1P53675 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CLTCL1P53675 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
CLTCL1P53675 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
CLTCL1P53675 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
CLTCL1P53675 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC26.74■■□□□ 1.87
CLTCL1P53675 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CLTCL1P53675 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
CLTCL1P53675 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC26.74■■□□□ 1.87
CLTCL1P53675 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC26.74■■□□□ 1.87
CLTCL1P53675 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
CLTCL1P53675 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC26.74■■□□□ 1.87
CLTCL1P53675 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
CLTCL1P53675 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC26.74■■□□□ 1.87
CLTCL1P53675 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CLTCL1P53675 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CLTCL1P53675 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
CLTCL1P53675 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
CLTCL1P53675 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
CLTCL1P53675 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC26.73■■□□□ 1.87
CLTCL1P53675 RN7SL606P-201ENST00000472779 293 ntBASIC26.73■■□□□ 1.87
CLTCL1P53675 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC26.73■■□□□ 1.87
CLTCL1P53675 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC26.73■■□□□ 1.87
CLTCL1P53675 NSUN5P1-202ENST00000421140 1535 ntBASIC26.73■■□□□ 1.87
CLTCL1P53675 NSUN5P2-203ENST00000457352 1529 ntBASIC26.73■■□□□ 1.87
CLTCL1P53675 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
CLTCL1P53675 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC26.73■■□□□ 1.87
CLTCL1P53675 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CLTCL1P53675 AC093484.2-201ENST00000580996 2166 ntBASIC26.73■■□□□ 1.87
CLTCL1P53675 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms