Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
COL4A4P53420 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.01■□□□□ 0.79
COL4A4P53420 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.01■□□□□ 0.79
COL4A4P53420 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
COL4A4P53420 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
COL4A4P53420 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL4A4P53420 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20■□□□□ 0.79
COL4A4P53420 AF238378.1-201ENST00000526806 358 ntBASIC20■□□□□ 0.79
COL4A4P53420 KRT18P58-201ENST00000527480 1120 ntBASIC20■□□□□ 0.79
COL4A4P53420 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
COL4A4P53420 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20■□□□□ 0.79
COL4A4P53420 Z69720.1-201ENST00000601483 472 ntBASIC20■□□□□ 0.79
COL4A4P53420 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL4A4P53420 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20■□□□□ 0.79
COL4A4P53420 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL4A4P53420 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
COL4A4P53420 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20■□□□□ 0.79
COL4A4P53420 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 HMGN1P19-201ENST00000436976 333 ntBASIC20■□□□□ 0.79
COL4A4P53420 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20■□□□□ 0.79
COL4A4P53420 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL4A4P53420 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20■□□□□ 0.79
COL4A4P53420 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
COL4A4P53420 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20■□□□□ 0.79
COL4A4P53420 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A4P53420 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A4P53420 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A4P53420 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.99■□□□□ 0.79
COL4A4P53420 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.99■□□□□ 0.79
COL4A4P53420 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A4P53420 NSUN5P1-202ENST00000421140 1535 ntBASIC19.99■□□□□ 0.79
COL4A4P53420 NSUN5P2-203ENST00000457352 1529 ntBASIC19.99■□□□□ 0.79
COL4A4P53420 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A4P53420 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A4P53420 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
COL4A4P53420 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
COL4A4P53420 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.99■□□□□ 0.79
COL4A4P53420 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.99■□□□□ 0.79
COL4A4P53420 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.99■□□□□ 0.79
COL4A4P53420 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL4A4P53420 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.99■□□□□ 0.79
COL4A4P53420 AC141586.3-201ENST00000562166 1838 ntBASIC19.98■□□□□ 0.79
COL4A4P53420 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.98■□□□□ 0.79
COL4A4P53420 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A4P53420 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A4P53420 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.98■□□□□ 0.79
COL4A4P53420 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A4P53420 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A4P53420 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.98■□□□□ 0.79
COL4A4P53420 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A4P53420 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.98■□□□□ 0.79
COL4A4P53420 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
COL4A4P53420 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A4P53420 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A4P53420 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A4P53420 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A4P53420 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A4P53420 PCDHAC2-203ENST00000615316 3011 ntBASIC19.98■□□□□ 0.79
COL4A4P53420 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.98■□□□□ 0.79
COL4A4P53420 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL4A4P53420 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.98■□□□□ 0.79
COL4A4P53420 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
COL4A4P53420 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.97■□□□□ 0.79
COL4A4P53420 SLC25A24-204ENST00000569674 2357 ntBASIC19.97■□□□□ 0.79
COL4A4P53420 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.97■□□□□ 0.79
COL4A4P53420 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 AP005901.3-202ENST00000581653 237 ntBASIC19.97■□□□□ 0.79
COL4A4P53420 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.97■□□□□ 0.79
COL4A4P53420 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.97■□□□□ 0.79
COL4A4P53420 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL4A4P53420 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
COL4A4P53420 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL4A4P53420 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms