Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC21.66■■□□□ 1.06
CTCFP49711 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.66■■□□□ 1.06
CTCFP49711 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CTCFP49711 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.66■■□□□ 1.06
CTCFP49711 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.66■■□□□ 1.06
CTCFP49711 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTCFP49711 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CTCFP49711 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.65■■□□□ 1.06
CTCFP49711 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CTCFP49711 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTCFP49711 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CTCFP49711 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.65■■□□□ 1.06
CTCFP49711 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
CTCFP49711 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CTCFP49711 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTCFP49711 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC21.65■■□□□ 1.06
CTCFP49711 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTCFP49711 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTCFP49711 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC21.65■■□□□ 1.06
CTCFP49711 KRT18P23-201ENST00000435622 1283 ntBASIC21.65■■□□□ 1.06
CTCFP49711 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC21.65■■□□□ 1.06
CTCFP49711 AC091607.1-201ENST00000490318 1060 ntBASIC21.65■■□□□ 1.06
CTCFP49711 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.65■■□□□ 1.06
CTCFP49711 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CTCFP49711 AC121338.2-201ENST00000622535 1744 ntBASIC21.65■■□□□ 1.06
CTCFP49711 AL157384.1-201ENST00000445995 2473 ntBASIC21.65■■□□□ 1.06
CTCFP49711 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CTCFP49711 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CTCFP49711 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CTCFP49711 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CTCFP49711 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CTCFP49711 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
CTCFP49711 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC21.64■■□□□ 1.05
CTCFP49711 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CTCFP49711 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC21.64■■□□□ 1.05
CTCFP49711 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC21.64■■□□□ 1.05
CTCFP49711 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC21.64■■□□□ 1.05
CTCFP49711 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC21.64■■□□□ 1.05
CTCFP49711 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CTCFP49711 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTCFP49711 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CTCFP49711 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CTCFP49711 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CTCFP49711 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.64■■□□□ 1.05
CTCFP49711 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTCFP49711 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTCFP49711 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTCFP49711 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTCFP49711 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC21.63■■□□□ 1.05
CTCFP49711 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CTCFP49711 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTCFP49711 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CTCFP49711 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.63■■□□□ 1.05
CTCFP49711 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.63■■□□□ 1.05
CTCFP49711 FGFR3P6-201ENST00000457012 610 ntBASIC21.63■■□□□ 1.05
CTCFP49711 HS6ST1P1-201ENST00000481504 1234 ntBASIC21.63■■□□□ 1.05
CTCFP49711 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
CTCFP49711 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC21.63■■□□□ 1.05
CTCFP49711 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.63■■□□□ 1.05
CTCFP49711 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC21.63■■□□□ 1.05
CTCFP49711 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTCFP49711 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTCFP49711 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CTCFP49711 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.63■■□□□ 1.05
CTCFP49711 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.63■■□□□ 1.05
CTCFP49711 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CTCFP49711 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC21.62■■□□□ 1.05
CTCFP49711 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
CTCFP49711 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CTCFP49711 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.62■■□□□ 1.05
CTCFP49711 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.62■■□□□ 1.05
CTCFP49711 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CTCFP49711 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC21.62■■□□□ 1.05
CTCFP49711 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
CTCFP49711 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 PTMS-202ENST00000389462 773 ntTSL 2 BASIC21.62■■□□□ 1.05
CTCFP49711 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC21.62■■□□□ 1.05
CTCFP49711 MIR3180-5-201ENST00000583743 153 ntBASIC21.62■■□□□ 1.05
CTCFP49711 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC21.62■■□□□ 1.05
CTCFP49711 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC21.62■■□□□ 1.05
CTCFP49711 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC21.62■■□□□ 1.05
CTCFP49711 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.62■■□□□ 1.05
CTCFP49711 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CTCFP49711 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC21.61■■□□□ 1.05
CTCFP49711 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTCFP49711 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
CTCFP49711 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
CTCFP49711 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms