Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX3P48380 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX3P48380 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX3P48380 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX3P48380 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RFX3P48380 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
RFX3P48380 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.6■□□□□ 0.41
RFX3P48380 AC008040.2-201ENST00000461049 708 ntBASIC17.6■□□□□ 0.41
RFX3P48380 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.6■□□□□ 0.41
RFX3P48380 NUDT16P1-203ENST00000513809 620 ntBASIC17.6■□□□□ 0.41
RFX3P48380 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.6■□□□□ 0.41
RFX3P48380 FSCN1P1-201ENST00000568912 1481 ntBASIC17.6■□□□□ 0.41
RFX3P48380 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
RFX3P48380 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RFX3P48380 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.6■□□□□ 0.41
RFX3P48380 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.6■□□□□ 0.41
RFX3P48380 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.6■□□□□ 0.41
RFX3P48380 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX3P48380 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX3P48380 LETM1P2-201ENST00000597330 2178 ntBASIC17.6■□□□□ 0.41
RFX3P48380 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX3P48380 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RFX3P48380 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RFX3P48380 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX3P48380 AC093503.3-201ENST00000624917 2352 ntBASIC17.59■□□□□ 0.41
RFX3P48380 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX3P48380 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX3P48380 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX3P48380 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX3P48380 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX3P48380 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
RFX3P48380 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX3P48380 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.59■□□□□ 0.41
RFX3P48380 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX3P48380 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX3P48380 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX3P48380 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX3P48380 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
RFX3P48380 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX3P48380 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
RFX3P48380 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX3P48380 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
RFX3P48380 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX3P48380 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.59■□□□□ 0.41
RFX3P48380 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RFX3P48380 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX3P48380 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.59■□□□□ 0.41
RFX3P48380 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.59■□□□□ 0.41
RFX3P48380 SLC25A1P4-201ENST00000567977 778 ntBASIC17.59■□□□□ 0.41
RFX3P48380 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.59■□□□□ 0.41
RFX3P48380 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX3P48380 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
RFX3P48380 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX3P48380 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
RFX3P48380 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX3P48380 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RFX3P48380 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
RFX3P48380 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.59■□□□□ 0.41
RFX3P48380 AC006333.2-201ENST00000607957 2099 ntBASIC17.59■□□□□ 0.41
RFX3P48380 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX3P48380 AC026471.1-201ENST00000564629 3026 ntBASIC17.58■□□□□ 0.41
RFX3P48380 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX3P48380 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX3P48380 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX3P48380 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX3P48380 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.58■□□□□ 0.41
RFX3P48380 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
RFX3P48380 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX3P48380 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX3P48380 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX3P48380 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.58■□□□□ 0.4
RFX3P48380 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
RFX3P48380 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX3P48380 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX3P48380 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
RFX3P48380 AC093827.2-201ENST00000512654 315 ntBASIC17.58■□□□□ 0.4
RFX3P48380 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RFX3P48380 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.58■□□□□ 0.4
RFX3P48380 AP003071.4-201ENST00000562276 1284 ntBASIC17.58■□□□□ 0.4
RFX3P48380 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.58■□□□□ 0.4
RFX3P48380 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
RFX3P48380 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.58■□□□□ 0.4
RFX3P48380 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.58■□□□□ 0.4
RFX3P48380 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
RFX3P48380 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX3P48380 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
RFX3P48380 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
RFX3P48380 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX3P48380 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX3P48380 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX3P48380 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.58■□□□□ 0.4
RFX3P48380 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX3P48380 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.58■□□□□ 0.4
RFX3P48380 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.57■□□□□ 0.4
RFX3P48380 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.57■□□□□ 0.4
RFX3P48380 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFX3P48380 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
RFX3P48380 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.57■□□□□ 0.4
RFX3P48380 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.57■□□□□ 0.4
RFX3P48380 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms