Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
USF1P22415 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
USF1P22415 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
USF1P22415 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC15.85■□□□□ 0.13
USF1P22415 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
USF1P22415 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC15.85■□□□□ 0.13
USF1P22415 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC15.85■□□□□ 0.13
USF1P22415 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
USF1P22415 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
USF1P22415 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
USF1P22415 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
USF1P22415 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
USF1P22415 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
USF1P22415 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
USF1P22415 LINC01311-201ENST00000565162 1445 ntBASIC15.85■□□□□ 0.13
USF1P22415 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
USF1P22415 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
USF1P22415 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
USF1P22415 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
USF1P22415 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
USF1P22415 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.84■□□□□ 0.13
USF1P22415 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
USF1P22415 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
USF1P22415 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
USF1P22415 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC15.84■□□□□ 0.13
USF1P22415 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.84■□□□□ 0.13
USF1P22415 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC15.84■□□□□ 0.13
USF1P22415 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.84■□□□□ 0.13
USF1P22415 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC15.84■□□□□ 0.13
USF1P22415 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.84■□□□□ 0.13
USF1P22415 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC15.84■□□□□ 0.13
USF1P22415 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.84■□□□□ 0.13
USF1P22415 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
USF1P22415 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
USF1P22415 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
USF1P22415 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
USF1P22415 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC15.84■□□□□ 0.13
USF1P22415 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
USF1P22415 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
USF1P22415 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC15.84■□□□□ 0.13
USF1P22415 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
USF1P22415 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
USF1P22415 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
USF1P22415 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
USF1P22415 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
USF1P22415 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
USF1P22415 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.83■□□□□ 0.13
USF1P22415 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC15.83■□□□□ 0.12
USF1P22415 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
USF1P22415 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.83■□□□□ 0.12
USF1P22415 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC15.83■□□□□ 0.12
USF1P22415 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
USF1P22415 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC15.83■□□□□ 0.12
USF1P22415 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC15.83■□□□□ 0.12
USF1P22415 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.83■□□□□ 0.12
USF1P22415 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
USF1P22415 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.83■□□□□ 0.12
USF1P22415 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC15.83■□□□□ 0.12
USF1P22415 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.83■□□□□ 0.12
USF1P22415 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC15.83■□□□□ 0.12
USF1P22415 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC15.83■□□□□ 0.12
USF1P22415 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC15.83■□□□□ 0.12
USF1P22415 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC15.83■□□□□ 0.12
USF1P22415 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
USF1P22415 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
USF1P22415 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC15.83■□□□□ 0.12
USF1P22415 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
USF1P22415 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC15.82■□□□□ 0.12
USF1P22415 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.82■□□□□ 0.12
USF1P22415 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.82■□□□□ 0.12
USF1P22415 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 AL450487.1-201ENST00000426799 995 ntBASIC15.82■□□□□ 0.12
USF1P22415 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 CD81-212ENST00000526072 1172 ntTSL 5 BASIC15.82■□□□□ 0.12
USF1P22415 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
USF1P22415 AL121894.2-201ENST00000602977 491 ntBASIC15.82■□□□□ 0.12
USF1P22415 FGF14-AS2-201ENST00000606448 1074 ntBASIC15.82■□□□□ 0.12
USF1P22415 AC083849.1-201ENST00000615227 514 ntBASIC15.82■□□□□ 0.12
USF1P22415 DFFB-212ENST00000625756 649 ntTSL 5 BASIC15.82■□□□□ 0.12
USF1P22415 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms