Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.18■□□□□ 0.82
RNF40O75150 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.18■□□□□ 0.82
RNF40O75150 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.18■□□□□ 0.82
RNF40O75150 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF40O75150 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF40O75150 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.18■□□□□ 0.82
RNF40O75150 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.18■□□□□ 0.82
RNF40O75150 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RNF40O75150 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF40O75150 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF40O75150 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.17■□□□□ 0.82
RNF40O75150 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.17■□□□□ 0.82
RNF40O75150 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF40O75150 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF40O75150 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF40O75150 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.17■□□□□ 0.82
RNF40O75150 AC010947.1-201ENST00000623454 693 ntBASIC20.17■□□□□ 0.82
RNF40O75150 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
RNF40O75150 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.17■□□□□ 0.82
RNF40O75150 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
RNF40O75150 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF40O75150 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.16■□□□□ 0.82
RNF40O75150 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
RNF40O75150 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF40O75150 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF40O75150 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF40O75150 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF40O75150 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.16■□□□□ 0.82
RNF40O75150 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF40O75150 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.16■□□□□ 0.82
RNF40O75150 KRT18P22-201ENST00000402024 1347 ntBASIC20.16■□□□□ 0.82
RNF40O75150 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF40O75150 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.16■□□□□ 0.82
RNF40O75150 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF40O75150 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RNF40O75150 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.15■□□□□ 0.82
RNF40O75150 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.15■□□□□ 0.82
RNF40O75150 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.15■□□□□ 0.82
RNF40O75150 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.15■□□□□ 0.82
RNF40O75150 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.15■□□□□ 0.82
RNF40O75150 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
RNF40O75150 KRT8P17-201ENST00000453110 1448 ntBASIC20.15■□□□□ 0.82
RNF40O75150 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
RNF40O75150 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RNF40O75150 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.15■□□□□ 0.82
RNF40O75150 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
RNF40O75150 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF40O75150 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
RNF40O75150 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
RNF40O75150 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms