Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.08■□□□□ 0.8
SMIM28A0A1B0GU29 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMIM28A0A1B0GU29 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.06■□□□□ 0.8
SMIM28A0A1B0GU29 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 HLA-F-220ENST00000434407 884 ntBASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 AL391807.1-203ENST00000604392 2365 ntBASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.05■□□□□ 0.8
SMIM28A0A1B0GU29 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms