Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS28Q9UK41 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS28Q9UK41 AC093503.3-201ENST00000624917 2352 ntBASIC19.27■□□□□ 0.68
VPS28Q9UK41 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
VPS28Q9UK41 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.68
VPS28Q9UK41 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS28Q9UK41 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS28Q9UK41 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS28Q9UK41 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
VPS28Q9UK41 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS28Q9UK41 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS28Q9UK41 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
VPS28Q9UK41 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS28Q9UK41 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS28Q9UK41 AL023284.2-201ENST00000405850 579 ntBASIC19.27■□□□□ 0.68
VPS28Q9UK41 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS28Q9UK41 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.68
VPS28Q9UK41 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS28Q9UK41 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.27■□□□□ 0.68
VPS28Q9UK41 AL049597.2-201ENST00000565575 961 ntBASIC19.27■□□□□ 0.68
VPS28Q9UK41 AC010331.1-201ENST00000611423 582 ntBASIC19.27■□□□□ 0.68
VPS28Q9UK41 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
VPS28Q9UK41 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS28Q9UK41 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS28Q9UK41 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.27■□□□□ 0.67
VPS28Q9UK41 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VPS28Q9UK41 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS28Q9UK41 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.27■□□□□ 0.67
VPS28Q9UK41 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS28Q9UK41 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS28Q9UK41 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
VPS28Q9UK41 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.27■□□□□ 0.67
VPS28Q9UK41 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS28Q9UK41 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS28Q9UK41 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS28Q9UK41 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 MCCD1P1-208ENST00000445732 328 ntBASIC19.26■□□□□ 0.67
VPS28Q9UK41 AC104076.2-201ENST00000448912 469 ntBASIC19.26■□□□□ 0.67
VPS28Q9UK41 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.26■□□□□ 0.67
VPS28Q9UK41 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS28Q9UK41 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 AC006011.2-201ENST00000621313 1158 ntBASIC19.26■□□□□ 0.67
VPS28Q9UK41 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS28Q9UK41 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
VPS28Q9UK41 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS28Q9UK41 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
VPS28Q9UK41 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
VPS28Q9UK41 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.26■□□□□ 0.67
VPS28Q9UK41 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VPS28Q9UK41 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 AL512353.2-201ENST00000448759 1962 ntBASIC19.25■□□□□ 0.67
VPS28Q9UK41 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 COX11P1-201ENST00000489116 835 ntBASIC19.25■□□□□ 0.67
VPS28Q9UK41 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 AC139887.4-201ENST00000607877 719 ntBASIC19.25■□□□□ 0.67
VPS28Q9UK41 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 CR769767.2-201ENST00000622735 460 ntBASIC19.25■□□□□ 0.67
VPS28Q9UK41 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms