Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 AL162430.1-201ENST00000480705 870 ntBASIC17.12■□□□□ 0.33
CLN6Q9NWW5 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 RAP2CP1-201ENST00000605103 478 ntBASIC17.12■□□□□ 0.33
CLN6Q9NWW5 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CLN6Q9NWW5 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 ESPNP-201ENST00000270691 2015 ntBASIC17.11■□□□□ 0.33
CLN6Q9NWW5 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 ANKRD20A6P-201ENST00000618763 204 ntBASIC17.11■□□□□ 0.33
CLN6Q9NWW5 AL121906.2-201ENST00000621597 723 ntBASIC17.11■□□□□ 0.33
CLN6Q9NWW5 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 AC124283.5-201ENST00000624661 1809 ntBASIC17.11■□□□□ 0.33
CLN6Q9NWW5 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.11■□□□□ 0.33
CLN6Q9NWW5 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLN6Q9NWW5 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 TSPY21P-201ENST00000433481 731 ntBASIC17.1■□□□□ 0.33
CLN6Q9NWW5 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CLN6Q9NWW5 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms