Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC092720.2-201ENST00000602388 1665 ntBASIC18.52■□□□□ 0.56
VPS13AQ96RL7 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
VPS13AQ96RL7 AC004832.2-201ENST00000426397 482 ntBASIC18.52■□□□□ 0.56
VPS13AQ96RL7 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13AQ96RL7 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13AQ96RL7 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.52■□□□□ 0.56
VPS13AQ96RL7 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13AQ96RL7 AC008556.1-201ENST00000610908 2040 ntBASIC18.52■□□□□ 0.56
VPS13AQ96RL7 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.52■□□□□ 0.55
VPS13AQ96RL7 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.52■□□□□ 0.55
VPS13AQ96RL7 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.52■□□□□ 0.55
VPS13AQ96RL7 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
VPS13AQ96RL7 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS13AQ96RL7 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS13AQ96RL7 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS13AQ96RL7 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 SPCS2P1-201ENST00000561636 679 ntBASIC18.51■□□□□ 0.55
VPS13AQ96RL7 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13AQ96RL7 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 AC093909.1-201ENST00000504731 1122 ntBASIC18.5■□□□□ 0.55
VPS13AQ96RL7 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 AL596442.2-201ENST00000610240 980 ntBASIC18.5■□□□□ 0.55
VPS13AQ96RL7 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 IGHGP-201ENST00000390555 1178 ntBASIC18.5■□□□□ 0.55
VPS13AQ96RL7 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 RN7SL606P-201ENST00000472779 293 ntBASIC18.5■□□□□ 0.55
VPS13AQ96RL7 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13AQ96RL7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 DNAJB3-201ENST00000446806 729 ntBASIC18.49■□□□□ 0.55
VPS13AQ96RL7 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 AL157384.1-201ENST00000445995 2473 ntBASIC18.49■□□□□ 0.55
VPS13AQ96RL7 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS13AQ96RL7 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms