Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.96■□□□□ 0.47
VMP1Q96GC9 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
VMP1Q96GC9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
VMP1Q96GC9 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VMP1Q96GC9 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VMP1Q96GC9 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VMP1Q96GC9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
VMP1Q96GC9 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VMP1Q96GC9 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
VMP1Q96GC9 MESTP1-201ENST00000404287 994 ntBASIC17.95■□□□□ 0.46
VMP1Q96GC9 TSPY15P-201ENST00000457163 923 ntBASIC17.95■□□□□ 0.46
VMP1Q96GC9 AC011506.1-201ENST00000474329 610 ntBASIC17.95■□□□□ 0.46
VMP1Q96GC9 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
VMP1Q96GC9 Z85996.1-201ENST00000494644 937 ntBASIC17.95■□□□□ 0.46
VMP1Q96GC9 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.95■□□□□ 0.46
VMP1Q96GC9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.95■□□□□ 0.46
VMP1Q96GC9 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.95■□□□□ 0.46
VMP1Q96GC9 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.95■□□□□ 0.46
VMP1Q96GC9 AC011298.2-201ENST00000617989 482 ntBASIC17.95■□□□□ 0.46
VMP1Q96GC9 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VMP1Q96GC9 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.95■□□□□ 0.46
VMP1Q96GC9 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VMP1Q96GC9 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VMP1Q96GC9 NOC2LP1-202ENST00000452600 2235 ntBASIC17.95■□□□□ 0.46
VMP1Q96GC9 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.95■□□□□ 0.46
VMP1Q96GC9 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.95■□□□□ 0.46
VMP1Q96GC9 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VMP1Q96GC9 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VMP1Q96GC9 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VMP1Q96GC9 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VMP1Q96GC9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.94■□□□□ 0.46
VMP1Q96GC9 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.94■□□□□ 0.46
VMP1Q96GC9 PKD1P1-201ENST00000458669 6805 ntBASIC17.94■□□□□ 0.46
VMP1Q96GC9 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 AC135050.7-201ENST00000624508 2218 ntBASIC17.94■□□□□ 0.46
VMP1Q96GC9 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VMP1Q96GC9 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
VMP1Q96GC9 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VMP1Q96GC9 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 ZNF815P-204ENST00000434898 1737 ntBASIC17.93■□□□□ 0.46
VMP1Q96GC9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
VMP1Q96GC9 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.93■□□□□ 0.46
VMP1Q96GC9 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VMP1Q96GC9 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 AP000525.1-201ENST00000608286 694 ntBASIC17.93■□□□□ 0.46
VMP1Q96GC9 AC130371.2-201ENST00000619443 611 ntBASIC17.93■□□□□ 0.46
VMP1Q96GC9 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.93■□□□□ 0.46
VMP1Q96GC9 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VMP1Q96GC9 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.93■□□□□ 0.46
VMP1Q96GC9 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.93■□□□□ 0.46
VMP1Q96GC9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.93■□□□□ 0.46
VMP1Q96GC9 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VMP1Q96GC9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VMP1Q96GC9 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms