Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL28A1Q2UY09 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18■□□□□ 0.47
COL28A1Q2UY09 TFP1-202ENST00000475455 1573 ntBASIC18■□□□□ 0.47
COL28A1Q2UY09 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL28A1Q2UY09 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL28A1Q2UY09 AC018445.3-201ENST00000624177 1945 ntBASIC18■□□□□ 0.47
COL28A1Q2UY09 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL28A1Q2UY09 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18■□□□□ 0.47
COL28A1Q2UY09 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL28A1Q2UY09 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL28A1Q2UY09 MIR574-201ENST00000385209 96 ntBASIC18■□□□□ 0.47
COL28A1Q2UY09 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18■□□□□ 0.47
COL28A1Q2UY09 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
COL28A1Q2UY09 PENK-208ENST00000523051 772 ntTSL 5 BASIC18■□□□□ 0.47
COL28A1Q2UY09 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18■□□□□ 0.47
COL28A1Q2UY09 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18■□□□□ 0.47
COL28A1Q2UY09 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18■□□□□ 0.47
COL28A1Q2UY09 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18■□□□□ 0.47
COL28A1Q2UY09 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
COL28A1Q2UY09 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL28A1Q2UY09 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL28A1Q2UY09 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL28A1Q2UY09 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL28A1Q2UY09 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 AFG3L1P-217ENST00000557444 2447 ntBASIC17.99■□□□□ 0.47
COL28A1Q2UY09 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.99■□□□□ 0.47
COL28A1Q2UY09 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.99■□□□□ 0.47
COL28A1Q2UY09 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.99■□□□□ 0.47
COL28A1Q2UY09 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 HLA-A-201ENST00000376802 1334 ntBASIC17.98■□□□□ 0.47
COL28A1Q2UY09 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 RASA4DP-201ENST00000460726 1199 ntBASIC17.98■□□□□ 0.47
COL28A1Q2UY09 Z85996.1-201ENST00000494644 937 ntBASIC17.98■□□□□ 0.47
COL28A1Q2UY09 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL28A1Q2UY09 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL28A1Q2UY09 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms