Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SF3A1Q15459 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.66■■□□□ 1.06
SF3A1Q15459 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SF3A1Q15459 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SF3A1Q15459 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.66■■□□□ 1.06
SF3A1Q15459 TSPY20P-201ENST00000450910 630 ntBASIC21.66■■□□□ 1.06
SF3A1Q15459 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SF3A1Q15459 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.66■■□□□ 1.06
SF3A1Q15459 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.66■■□□□ 1.06
SF3A1Q15459 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SF3A1Q15459 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SF3A1Q15459 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SF3A1Q15459 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.66■■□□□ 1.06
SF3A1Q15459 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SF3A1Q15459 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21.66■■□□□ 1.06
SF3A1Q15459 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SF3A1Q15459 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SF3A1Q15459 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SF3A1Q15459 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
SF3A1Q15459 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC21.65■■□□□ 1.06
SF3A1Q15459 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SF3A1Q15459 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SF3A1Q15459 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC21.65■■□□□ 1.06
SF3A1Q15459 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SF3A1Q15459 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SF3A1Q15459 KSR1P1-201ENST00000446298 240 ntBASIC21.65■■□□□ 1.06
SF3A1Q15459 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.65■■□□□ 1.06
SF3A1Q15459 AL359736.2-201ENST00000621992 437 ntBASIC21.65■■□□□ 1.06
SF3A1Q15459 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.65■■□□□ 1.06
SF3A1Q15459 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
SF3A1Q15459 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
SF3A1Q15459 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SF3A1Q15459 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SF3A1Q15459 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.65■■□□□ 1.06
SF3A1Q15459 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SF3A1Q15459 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SF3A1Q15459 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SF3A1Q15459 PKD1P1-201ENST00000458669 6805 ntBASIC21.65■■□□□ 1.06
SF3A1Q15459 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.65■■□□□ 1.06
SF3A1Q15459 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.65■■□□□ 1.06
SF3A1Q15459 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
SF3A1Q15459 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.65■■□□□ 1.06
SF3A1Q15459 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.64■■□□□ 1.06
SF3A1Q15459 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SF3A1Q15459 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
SF3A1Q15459 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.64■■□□□ 1.06
SF3A1Q15459 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SF3A1Q15459 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SF3A1Q15459 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.64■■□□□ 1.06
SF3A1Q15459 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.64■■□□□ 1.06
SF3A1Q15459 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.64■■□□□ 1.05
SF3A1Q15459 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SF3A1Q15459 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SF3A1Q15459 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SF3A1Q15459 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SF3A1Q15459 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SF3A1Q15459 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
SF3A1Q15459 FAM201B-201ENST00000458407 597 ntBASIC21.64■■□□□ 1.05
SF3A1Q15459 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.64■■□□□ 1.05
SF3A1Q15459 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC21.64■■□□□ 1.05
SF3A1Q15459 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.64■■□□□ 1.05
SF3A1Q15459 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.64■■□□□ 1.05
SF3A1Q15459 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SF3A1Q15459 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.64■■□□□ 1.05
SF3A1Q15459 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SF3A1Q15459 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.64■■□□□ 1.05
SF3A1Q15459 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SF3A1Q15459 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SF3A1Q15459 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SF3A1Q15459 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SF3A1Q15459 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SF3A1Q15459 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SF3A1Q15459 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
SF3A1Q15459 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SF3A1Q15459 HR-201ENST00000312841 5351 ntTSL 5 BASIC21.63■■□□□ 1.05
SF3A1Q15459 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
SF3A1Q15459 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.63■■□□□ 1.05
SF3A1Q15459 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.63■■□□□ 1.05
SF3A1Q15459 AC091390.4-202ENST00000476426 537 ntBASIC21.63■■□□□ 1.05
SF3A1Q15459 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.63■■□□□ 1.05
SF3A1Q15459 ITM2C-210ENST00000620962 501 ntBASIC21.63■■□□□ 1.05
SF3A1Q15459 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SF3A1Q15459 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.63■■□□□ 1.05
SF3A1Q15459 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.63■■□□□ 1.05
SF3A1Q15459 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SF3A1Q15459 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.63■■□□□ 1.05
SF3A1Q15459 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.63■■□□□ 1.05
SF3A1Q15459 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SF3A1Q15459 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SF3A1Q15459 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC21.63■■□□□ 1.05
SF3A1Q15459 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC21.62■■□□□ 1.05
SF3A1Q15459 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SF3A1Q15459 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SF3A1Q15459 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.62■■□□□ 1.05
SF3A1Q15459 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.62■■□□□ 1.05
SF3A1Q15459 RCC2P6-201ENST00000526625 1557 ntBASIC21.62■■□□□ 1.05
SF3A1Q15459 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SF3A1Q15459 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
SF3A1Q15459 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC21.62■■□□□ 1.05
SF3A1Q15459 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms