Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
H3F3AP84243 Z98044.1-201ENST00000632503 1764 ntBASIC16.76■□□□□ 0.27
H3F3AP84243 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
H3F3AP84243 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.76■□□□□ 0.27
H3F3AP84243 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
H3F3AP84243 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
H3F3AP84243 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
H3F3AP84243 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
H3F3AP84243 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.75■□□□□ 0.27
H3F3AP84243 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.75■□□□□ 0.27
H3F3AP84243 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.75■□□□□ 0.27
H3F3AP84243 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.75■□□□□ 0.27
H3F3AP84243 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 HMGA1P5-201ENST00000412453 271 ntBASIC16.75■□□□□ 0.27
H3F3AP84243 AC211429.1-201ENST00000415277 523 ntBASIC16.75■□□□□ 0.27
H3F3AP84243 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
H3F3AP84243 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.75■□□□□ 0.27
H3F3AP84243 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.75■□□□□ 0.27
H3F3AP84243 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.75■□□□□ 0.27
H3F3AP84243 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.75■□□□□ 0.27
H3F3AP84243 WWOX-216ENST00000569818 525 ntBASIC16.75■□□□□ 0.27
H3F3AP84243 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
H3F3AP84243 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.75■□□□□ 0.27
H3F3AP84243 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.75■□□□□ 0.27
H3F3AP84243 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.75■□□□□ 0.27
H3F3AP84243 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 AL357033.4-201ENST00000617703 1807 ntBASIC16.75■□□□□ 0.27
H3F3AP84243 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
H3F3AP84243 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
H3F3AP84243 AC093503.3-201ENST00000624917 2352 ntBASIC16.74■□□□□ 0.27
H3F3AP84243 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
H3F3AP84243 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
H3F3AP84243 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
H3F3AP84243 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
H3F3AP84243 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.74■□□□□ 0.27
H3F3AP84243 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.74■□□□□ 0.27
H3F3AP84243 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
H3F3AP84243 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.74■□□□□ 0.27
H3F3AP84243 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
H3F3AP84243 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
H3F3AP84243 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.74■□□□□ 0.27
H3F3AP84243 MIR3180-5-201ENST00000583743 153 ntBASIC16.74■□□□□ 0.27
H3F3AP84243 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.74■□□□□ 0.27
H3F3AP84243 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
H3F3AP84243 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.74■□□□□ 0.27
H3F3AP84243 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.74■□□□□ 0.27
H3F3AP84243 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
H3F3AP84243 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
H3F3AP84243 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
H3F3AP84243 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
H3F3AP84243 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.74■□□□□ 0.27
H3F3AP84243 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
H3F3AP84243 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
H3F3AP84243 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
H3F3AP84243 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
H3F3AP84243 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
H3F3AP84243 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.74■□□□□ 0.27
H3F3AP84243 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
H3F3AP84243 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.73■□□□□ 0.27
H3F3AP84243 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
H3F3AP84243 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
H3F3AP84243 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
H3F3AP84243 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.73■□□□□ 0.27
H3F3AP84243 MIR564-202ENST00000385049 94 ntBASIC16.73■□□□□ 0.27
H3F3AP84243 CR769767.2-201ENST00000622735 460 ntBASIC16.73■□□□□ 0.27
H3F3AP84243 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
H3F3AP84243 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.73■□□□□ 0.27
H3F3AP84243 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
H3F3AP84243 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
H3F3AP84243 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
H3F3AP84243 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.72■□□□□ 0.27
H3F3AP84243 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.72■□□□□ 0.27
H3F3AP84243 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.72■□□□□ 0.27
H3F3AP84243 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
H3F3AP84243 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
H3F3AP84243 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
H3F3AP84243 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms